RetrogeneDB ID: | retro_cfam_1749 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 5:81337623..81338010(+) | ||
Located in intron of: | ENSCAFG00000020324 | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000020325 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PFDN6 | ||
Ensembl ID: | ENSCAFG00000000956 | ||
Aliases: | None | ||
Description: | Canis lupus familiaris prefoldin subunit 6 (PFDN6), mRNA. [Source:RefSeq mRNA;Acc:NM_001048089] |
Percent Identity: | 97.67 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAELIQKKLQGEVEKYQQLQKDLSKSMSGRQKLEAQLTENNIVKEELALLDGSNVVFKLLGPVLVKQELG |
MAELIQKKLQGEVEKYQQLQKDLSKSMSGRQKLEAQLTENNIVKEELALLDGSNVVFKLLGPVLVKQELG | |
Retrocopy | MAELIQKKLQGEVEKYQQLQKDLSKSMSGRQKLEAQLTENNIVKEELALLDGSNVVFKLLGPVLVKQELG |
Parental | EARATVGKRLDYITAEIKRYESQLRDLERQSEQQRETLAQLQQEFQRAQAAKAGASGKA |
EARATVGKRLDYITAEIKRYESQL.DLE.QSEQQRETLAQLQQEFQRAQAAKAGASG.A | |
Retrocopy | EARATVGKRLDYITAEIKRYESQLQDLEWQSEQQRETLAQLQQEFQRAQAAKAGASGMA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 26 .92 RPM |
SRP017611_brain | 0 .08 RPM | 13 .42 RPM |
SRP017611_kidney | 0 .07 RPM | 27 .87 RPM |
SRP017611_liver | 0 .07 RPM | 12 .04 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000001576 | 2 retrocopies | |
Bos taurus | ENSBTAG00000010723 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000000956 | 2 retrocopies |
retro_cfam_1749 , retro_cfam_1981,
|
Dipodomys ordii | ENSDORG00000013828 | 1 retrocopy | |
Felis catus | ENSFCAG00000028199 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000016778 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000000922 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000002364 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000010559 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000028341 | 4 retrocopies | |
Ochotona princeps | ENSOPRG00000000983 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000001910 | 1 retrocopy |