RetrogeneDB ID: | retro_amel_824 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192665.1:1275977..1276209(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PFDN6 | ||
Ensembl ID: | ENSAMEG00000001576 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 72.84 % |
Parental protein coverage: | 68.97 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | AELIQKKLQGEVEKYQQLQKDLSKSMSGRQKLEAQLTENNIVKEELALLDGSNVV-FKLLGPVLVKQELG |
AELIQK.LQGEVEK...LQKDLSKSMS.RQK.E.QLTEN...KE..ALLDGSNVV.F.LLGPV.VK.E.G | |
Retrocopy | AELIQK-LQGEVEK*--LQKDLSKSMSARQKIEVQLTENGTMKEKPALLDGSNVV>FTLLGPVRVKGERG |
Parental | EARATVGKRLD |
.A..T..KRLD | |
Retrocopy | QAQSTGWKRLD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000001576 | 2 retrocopies |
retro_amel_221, retro_amel_824 ,
|
Bos taurus | ENSBTAG00000010723 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000000956 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000019520 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000013828 | 1 retrocopy | |
Felis catus | ENSFCAG00000028199 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000016778 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000000922 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000002364 | 1 retrocopy | |
Mus musculus | ENSMUSG00000024309 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000010559 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000028341 | 4 retrocopies | |
Ochotona princeps | ENSOPRG00000000983 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000001910 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000000473 | 2 retrocopies | |
Sorex araneus | ENSSARG00000006330 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000013280 | 1 retrocopy |