RetrogeneDB ID: | retro_cfam_319 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 1:72704565..72705172(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C1QBP | ||
Ensembl ID: | ENSCAFG00000015542 | ||
Aliases: | None | ||
Description: | complement component 1, q subcomponent binding protein [Source:HGNC Symbol;Acc:1243] |
Percent Identity: | 71.22 % |
Parental protein coverage: | 74.63 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | LRSRGPCGCGCGGLHTQGDKAFVEFLNDEIKEEKKIQKHKSLP-KMSGGWELDMNGTEAKLVRKVAGEKI |
L...G.C.CGC..LHT.GDK.FVEFLND..KE..KIQKHKSLP.KMSGG.EL..NGTEAKL..K..GEKI | |
Retrocopy | LPGAGACACGCDVLHT*GDK-FVEFLNDGLKEKRKIQKHKSLP>KMSGGCELEVNGTEAKLMQKTVGEKI |
Parental | TVTFNINNSIPPTFEGEEEPAQGQKADEQEPELTSTPNFVVEVIKDGGKRALVLDCHYPEDEVGQEEEDE |
TVT.N.N..I.PT....EEP.QG....EQEPELT.TP.FV.EVIK.GGK.AL.LDCH.PEDEVGQEE.D. | |
Retrocopy | TVTWNVNKTISPTYDRNEEPSQGHMVEEQEPELTATPRFVAEVIKNGGKKALLLDCHNPEDEVGQEE-DK |
Parental | SDIFSIREVSFQAVGESEWKDTNYTLNTDSLDWALYDHLMDFLADRG-VDNTFADELVELSTALE |
.DI.SIR.VSFQ..GESEWKD.NYTLN..SL..ALYDHLMDFLA..G.V.NT.ADELVELSTALE | |
Retrocopy | NDILSIRKVSFQSPGESEWKDMNYTLNIHSLARALYDHLMDFLAG*GVVNNTSADELVELSTALE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 80 .68 RPM |
SRP017611_brain | 0 .00 RPM | 59 .62 RPM |
SRP017611_kidney | 0 .00 RPM | 126 .46 RPM |
SRP017611_liver | 0 .00 RPM | 46 .77 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006043 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000015542 | 3 retrocopies |
retro_cfam_1595, retro_cfam_319 , retro_cfam_325,
|
Felis catus | ENSFCAG00000026474 | 3 retrocopies | |
Macropus eugenii | ENSMEUG00000014882 | 13 retrocopies | |
Mustela putorius furo | ENSMPUG00000011246 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000013150 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000002441 | 2 retrocopies |