RetrogeneDB ID: retro_mputfur_1213

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897043.1:4076333..4077108(-)
• Located in intron of: ENSMPUG00000009515

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: C1QBP
• Ensembl ID: ENSMPUG00000011246
• Aliases: None
• Description: complement component 1, q subcomponent binding protein [Source:HGNC Symbol;Acc:1243]

Sequence

>retro_mputfur_1213
GCCATGCCTGCCCTCTTGTCTCAGCCCACGCGGCTGCCTTCGCCACTGCAGCCCATGCACCCCAGGCCATACATGCAGCC
CTTTGTGCGGCTCCAGGTGGCAAGGGCCCATGCTGCCTACGGTCTCCTGCGCTCTCCTGGGCCCTGCGGCTGCAGCACAC
TGCACACCCAGGGGCACAGAGCTTTTGTTGAATTGCTGAATGATGACATTGAGGAGGAAATGGAGATACCAAAGCGTAAT
TACCTCCCCAAGAGTTCTGGAAGTTGGGAGCTGGAAGTAGATGGGTCAGAAGCCAAGTTTTTGCAGAAAGTTGCCGGAGA
GAAGATCACTGTGGCTTTCCACGTTGACAGTAGTATCCTGCCAACATTGGATGGGGAGGAGGAGCCCTCCAAGGGCAGAA
GGTTGAAGAACAGCCTGATTGACATCCATTCCCAGTTTTGTGGTAGAAGTTGTGAGGACTTGTGGCAAGAAGCCCCCGGT
GCTGGACTGTTCCTGTCCAGAAGATGAGACTAGGCAAGAAGAGGAGGTCCAGAGTGACACTGTCTCCATCAGGGAAGTGA
GCTTTCAGTCTGTTGAGTCTGAGTGGAAGGATCTGAATTACACAGTCAACACTGATCCCCTGGACTGGGCCTTATATGAC
TACCTGATGGATTTCCCGGCAGATGGATGGGTGGGTAACACTTCTGCAGATGAGTTGGTAGAGCTCCGCACAGACCTGGA
GCACCGGGAATACATTCCTTTAATCTACGATCACAAACATTTTGTCAGAAGCCAG

Alignment

ORF - retro_mputfur_1213 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 60.75 %
• Parental protein coverage: 94.85 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  AAAVLRSAPAPPPRPL--LQPAP--RPCVR-PFGSLRVRAGLLRSRGPCGCGCGALHTQGDKAFVEFLSD
          A...L.S.P...P.PL....P.P...P.VR..........GLLRS.GPCGC....LHTQG..AFVE.L.D
Retrocopy AMPALLSQPTRLPSPLQPMHPRPYMQPFVRLQVARAHAAYGLLRSPGPCGCS--TLHTQGHRAFVELLND

Parental  EIKEERKIQKHKSLPKMSGGWELEVNGTEAKLVRRVAGEKVTVTFNTNNSIPPTFDGEEEPS-QGQKAEE
          .I.EE..I.K...LPK.SG.WELEV.G.EAK....VAGEK.TV.F....SI.PT.DGEEEPS.QGQK.EE
Retrocopy DIEEEMEIPKRNYLPKSSGSWELEVDGSEAKFLQKVAGEKITVAFHVDSSILPTLDGEEEPS<QGQKVEE

Parental  QEPE-LTSTPNFVVEVIKDGGKKALVLDCHYPEDEVGQEEEEESDIFSIREVSFQAVGESEWKDTNYTLN
          Q.P..LTS.P.FVVEV....GKK..VLDC..PEDE..QEEE..SD..SIREVSFQ.V.ESEWKD.NYT.N
Retrocopy Q-PD<LTSIPSFVVEVVRTCGKKPPVLDCSCPEDETRQEEEVQSDTVSIREVSFQSV-ESEWKDLNYTVN

Parental  TDSLDWALYDHLMDFLADRGVDNTFADELVELSTALEHREYIAFLEDLQGFVKTQ
          TD.LDWALYD.LMDF.AD..V.NT.ADELVEL.T.LEHREYI....D...FV..Q
Retrocopy TDPLDWALYDYLMDFPADGWVGNTSADELVELRTDLEHREYIPLIYDHKHFVRSQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1213 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1213 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 25 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000006043	2 retrocopies	retro_amel_1734, retro_amel_356,
Canis familiaris	ENSCAFG00000015542	3 retrocopies	retro_cfam_1595, retro_cfam_319, retro_cfam_325,
Felis catus	ENSFCAG00000026474	3 retrocopies	retro_fcat_1135, retro_fcat_1763, retro_fcat_892,
Macropus eugenii	ENSMEUG00000014882	13 retrocopies	retro_meug_1068, retro_meug_1347, retro_meug_1363, retro_meug_1446, retro_meug_1901, retro_meug_1940, retro_meug_1970, retro_meug_2069, retro_meug_2128, retro_meug_434, retro_meug_580, retro_meug_988, retro_meug_989,
Mustela putorius furo	ENSMPUG00000011246	1 retrocopy	retro_mputfur_1213 ,
Ochotona princeps	ENSOPRG00000013150	1 retrocopy	retro_opri_408,
Sarcophilus harrisii	ENSSHAG00000002441	2 retrocopies	retro_shar_620, retro_shar_813,