RetrogeneDB ID: | retro_chof_1514 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_31267:1073..1670(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MAPRE1 | ||
Ensembl ID: | ENSCHOG00000006737 | ||
Aliases: | None | ||
Description: | microtubule-associated protein, RP/EB family, member 1 [Source:HGNC Symbol;Acc:6890] |
Percent Identity: | 79.1 % |
Parental protein coverage: | 73.96 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAGSPRGHIMFPGSSAL--VKFQAK-SHA |
.AVNVY.TSVTSDNLS.H.MLAWIN.SLQ.NLTKIEQLCSGAA........FPGS.AL..VKFQAK.... | |
Retrocopy | VAVNVYLTSVTSDNLS*HAMLAWINKSLQFNLTKIEQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLENE |
Parental | YIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFE-FVQWFKKFFDANYDGKDYDPVAARQGQETA-VA |
YIQNFKILQAGFKRM..DKIIPVDKLVKGKFQDNFE..VQWFKKFFD.NYD.KD.DP.AAR.GQ....V. | |
Retrocopy | YIQNFKILQAGFKRMSTDKIIPVDKLVKGKFQDNFE<IVQWFKKFFDVNYDRKDCDPLAARKGQKNG>VP |
Parental | PSLVAPALNKPKKPLSSSSAAPQRPISTQRTTATPKAGPGVVRKNPGVGNGEDEAAELMQQ |
PSLVAPALNKPK..LSS.SAAPQRPIST.RTTA.PKAGPGVVRKNPGVGNG.DEAAELM.Q | |
Retrocopy | PSLVAPALNKPKNLLSSNSAAPQRPISTRRTTAMPKAGPGVVRKNPGVGNGDDEAAELMKQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |