Parental gene:

MAPRE1, ENSCAFG00000007306

Aliases:None
Description:Canis lupus familiaris microtubule-associated protein, RP/EB family, member 1 (MAPRE1), mRNA. [Source:RefSeq mRNA;Acc:NM_001251946]
Organism:Dog (Canis familiaris)
Coordinates:24:22130124..22163913(+)


>ENSCAFG00000007306
TTTGAACGAGACGAAGACGGAATCGAAGCCGGGCACAGGCAGTGGACGCGGTCCCGCCGAGAGCCGAAGATGGCAGTGAA
CGTATACTCAACGTCCGTCACCAGTGATAACCTAAGTCGACATGATATGCTGGCCTGGATCAATGAGTCTCTGCAGCTGA
ATCTGACAAAGATTGAACAGTTGTGCTCAGGGGCTGCCTATTGTCAGTTTATGGACATGCTATTCCCTGGCTCCATTGCC
TTGAAGAAAGTGAAATTCCAGGCTAAACTAGAGCATGAATACATCCAGAACTTCAAAATACTACAAGCAGGTTTTAAGAG
AATGGGTGTTGACAAAATAATTCCTGTGGACAAATTAGTAAAAGGAAAGTTTCAGGACAATTTTGAATTTGTTCAGTGGT
TCAAGAAGTTTTTTGATGCAAACTATGATGGAAAAGACTATGACCCTGTAGCTGCCAGACAAGGTCAAGAAACTGCAGTG
GCTCCCTCCCTTGTTGCTCCAGCTCTGAACAAACCGAAGAAACCTCTCAGCTCTAGCAGTGCAGCTCCACAGAGGCCCAT
TGCAACACACAGAACTACTGCAACCCCTAAGGCTGGCCCGGGTGTGGTGCGAAAGAATCCTGGTGTGGGCAACGGGGATG
ATGAAGCAGCTGAATTGATGCAGCAGGTCAATGTATTGAAACTTACCGTCGAAGACTTGGAGAAAGAGAGAGATTTCTAC
TTTGGAAAGCTAAGAAACATTGAATTGATTTGCCAGGAGAACGAAGGGGAAAACAACCCTGTATTGCAGAGGATCGTGGA
CATTCTCTATGCCACAGATGAAGGCTTTGTGATACCTGATGAAGGGGGCCCACAGGAGGAACAAGAAGAG

Library Parental gene expression (RPM)
SRP012049_cerebellum 13 .57 RPM
SRP017611_brain 8 .10 RPM
SRP017611_kidney 7 .59 RPM
SRP017611_liver 1 .74 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000013238 ortholog_one2many 3 retrogenes
retro_amel_1187, retro_amel_1436, retro_amel_848,
Choloepus hoffmanni ENSCHOG00000006737 ortholog_one2many 10 retrogenes
retro_chof_1064, retro_chof_1075, retro_chof_1113, retro_chof_1138, retro_chof_1514, retro_chof_2248, retro_chof_2557, retro_chof_2591, retro_chof_643, retro_chof_704,
Callithrix jacchus ENSCJAG00000015601 ortholog_many2many 10 retrogenes
retro_cjac_1424, retro_cjac_1647, retro_cjac_1946, retro_cjac_2077, retro_cjac_2084, retro_cjac_2366, retro_cjac_2861, retro_cjac_3259, retro_cjac_3271, retro_cjac_3308,
Cavia porcellus ENSCPOG00000023542 possible_ortholog 1 retrogene
retro_cpor_194,
Dasypus novemcinctus ENSDNOG00000007431 ortholog_one2many 2 retrogenes
retro_dnov_730, retro_dnov_822,
Erinaceus europaeus ENSEEUG00000004499 possible_ortholog 1 retrogene
retro_eeur_179,
Echinops telfairi ENSETEG00000017922 possible_ortholog 4 retrogenes
retro_etel_1747, retro_etel_1778, retro_etel_2148, retro_etel_222,
Felis catus ENSFCAG00000007783 ortholog_one2many 2 retrogenes
retro_fcat_1335, retro_fcat_970,
Gorilla gorilla ENSGGOG00000022496 ortholog_many2many 1 retrogene
retro_ggor_2765,
Loxodonta africana ENSLAFG00000015453 ortholog_one2many 1 retrogene
retro_lafr_975,
Microcebus murinus ENSMICG00000001965 ortholog_one2many 3 retrogenes
retro_mmur_1125, retro_mmur_1179, retro_mmur_129,
Myotis lucifugus ENSMLUG00000016403 ortholog_one2many 6 retrogenes
retro_mluc_1212, retro_mluc_1811, retro_mluc_1812, retro_mluc_1883, retro_mluc_635, retro_mluc_931,
Macaca mulatta ENSMMUG00000001816 ortholog_one2many 2 retrogenes
retro_mmul_1938, retro_mmul_2374,
Monodelphis domestica ENSMODG00000019445 ortholog_one2many 3 retrogenes
retro_mdom_1213, retro_mdom_1946, retro_mdom_431,
Mustela putorius furo ENSMPUG00000017867 ortholog_one2many 3 retrogenes
retro_mputfur_1240, retro_mputfur_1304, retro_mputfur_341,
Mus musculus ENSMUSG00000027479 possible_ortholog 2 retrogenes
retro_mmus_3160, retro_mmus_3466,
Oryctolagus cuniculus ENSOCUG00000024265 ortholog_one2many 1 retrogene
retro_ocun_582,
Otolemur garnettii ENSOGAG00000026557 ortholog_many2many 2 retrogenes
retro_ogar_226, retro_ogar_2290,
Ochotona princeps ENSOPRG00000006707 ortholog_one2many 4 retrogenes
retro_opri_1161, retro_opri_1162, retro_opri_1212, retro_opri_807,
Pteropus vampyrus ENSPVAG00000015887 ortholog_one2many 1 retrogene
retro_pvam_1035,
Sorex araneus ENSSARG00000002368 possible_ortholog 1 retrogene
retro_sara_380,
Tarsius syrichta ENSTSYG00000000833 ortholog_one2many 1 retrogene
retro_tsyr_2018,
Tursiops truncatus ENSTTRG00000014809 ortholog_one2many 2 retrogenes
retro_ttru_1683, retro_ttru_1917,
Drosophila melanogaster FBgn0027066 ortholog_many2many 1 retrogene
retro_dmel_83,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_241 99.31 100.00
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2. retro_cfam_547 94.40 92.41
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3. retro_cfam_762 83.93 95.86
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4. retro_cfam_774 89.93 51.03
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5. retro_cfam_806 96.01 94.83
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6. retro_cfam_913 97.56 98.97
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7. retro_cfam_1338 90.00 100.00
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8. retro_cfam_1554 92.42 68.28
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9. retro_cfam_1665 95.19 99.66
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10. retro_cfam_1804 75.27 95.17
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11. retro_cfam_1808 96.55 100.00
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12. retro_cfam_2084 92.59 92.76
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13. retro_cfam_2163 94.43 98.97
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Download FASTA sequences of all ENSCAFG00000007306 retrocopies