Parental gene: | ENSCJAG00000015601 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 5:4428580..4452053(-) |
>ENSCJAG00000015601
ATGGCAGTGAACGTATACTCAACGTCAGTGACCAGTGATAATCTAAGTCGACATGACATGCTGGCCTGGATCAATGAGTC
TCTGCAGTTGAATCTGACAAAGATTGAACAGTTGTGCTCAGGGGCTGCCTATTGTCAGTTTATGGACATGCTGTTTCCTG
GCTCCATTGCCTTGAAGAAAGTGAAATTCCAAGCTAAGCTAGAACACGAATACATCCAGAACTTCAAAATACTACAAGCG
GGTTTTAAGAGGATGGGTGTTGACAAAATAATTCCTGTGGACAAATTAGTAAAAGGAAAGTTTCAGGACAATTTTGAATT
TGTTCAGTGGTTCAAGAAGTTTTTTGATGCAAACTATGATGGAAAAGACTATGACCCTGTGGCTGCCAGACAAGGTCAAG
AAACTGCGGTGGCTCCCTCCCTCGTTGCTCCAGCTCTGAATAAACCGAAGAAACCTCTTAGTTCTAGTAGTGCAGCTCCC
CAGAGGCCCATCTCAACACAGAGAACTGCTGCGGCTCCTAAGGCTGGCCCTGGTGTGGTGCGAAAGAACCCTGGTGTGGG
CAATGGGGATGACGAGGCAGCTGAGTTGATGCAGCAGGTCAACGTATTGAAACTTACTGTTGAAGACTTGGAGAAAGAGA
GGGACTTCTACTTCGGAAAGCTACGGAACATTGAATTGATTTGCCAGGAGAATGAGGGGGAAAACGACCCTGTATTGCAG
AGGATTGTAGACATTCTGTATGCCACAGATGAAGGCTTTGTGATACCTGATGAAGGGGGCCCACAGGAGGAGCAGGAAGA
GTATTGA
ATGGCAGTGAACGTATACTCAACGTCAGTGACCAGTGATAATCTAAGTCGACATGACATGCTGGCCTGGATCAATGAGTC
TCTGCAGTTGAATCTGACAAAGATTGAACAGTTGTGCTCAGGGGCTGCCTATTGTCAGTTTATGGACATGCTGTTTCCTG
GCTCCATTGCCTTGAAGAAAGTGAAATTCCAAGCTAAGCTAGAACACGAATACATCCAGAACTTCAAAATACTACAAGCG
GGTTTTAAGAGGATGGGTGTTGACAAAATAATTCCTGTGGACAAATTAGTAAAAGGAAAGTTTCAGGACAATTTTGAATT
TGTTCAGTGGTTCAAGAAGTTTTTTGATGCAAACTATGATGGAAAAGACTATGACCCTGTGGCTGCCAGACAAGGTCAAG
AAACTGCGGTGGCTCCCTCCCTCGTTGCTCCAGCTCTGAATAAACCGAAGAAACCTCTTAGTTCTAGTAGTGCAGCTCCC
CAGAGGCCCATCTCAACACAGAGAACTGCTGCGGCTCCTAAGGCTGGCCCTGGTGTGGTGCGAAAGAACCCTGGTGTGGG
CAATGGGGATGACGAGGCAGCTGAGTTGATGCAGCAGGTCAACGTATTGAAACTTACTGTTGAAGACTTGGAGAAAGAGA
GGGACTTCTACTTCGGAAAGCTACGGAACATTGAATTGATTTGCCAGGAGAATGAGGGGGAAAACGACCCTGTATTGCAG
AGGATTGTAGACATTCTGTATGCCACAGATGAAGGCTTTGTGATACCTGATGAAGGGGGCCCACAGGAGGAGCAGGAAGA
GTATTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 24 .77 RPM |
| SRP051959_skeletal_muscle | 12 .43 RPM |
| SRP051959_lymph_node | 28 .97 RPM |
| SRP051959_lung | 25 .88 RPM |
| SRP051959_liver | 9 .64 RPM |
| SRP051959_kidney | 25 .65 RPM |
| SRP051959_heart | 18 .61 RPM |
| SRP051959_colon | 28 .75 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000013238 | ortholog_one2many | 3 retrogenes | |
| Canis familiaris | ENSCAFG00000007306 | ortholog_many2many | 13 retrogenes | |
| Choloepus hoffmanni | ENSCHOG00000006737 | ortholog_one2many | 10 retrogenes | |
| Cavia porcellus | ENSCPOG00000023542 | possible_ortholog | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000007431 | ortholog_one2many | 2 retrogenes | |
| Erinaceus europaeus | ENSEEUG00000004499 | possible_ortholog | 1 retrogene | |
| Echinops telfairi | ENSETEG00000017922 | possible_ortholog | 4 retrogenes | |
| Felis catus | ENSFCAG00000007783 | ortholog_one2many | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000022496 | ortholog_many2many | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000015453 | ortholog_one2many | 1 retrogene | |
| Microcebus murinus | ENSMICG00000001965 | ortholog_one2many | 3 retrogenes | |
| Myotis lucifugus | ENSMLUG00000016403 | ortholog_one2many | 6 retrogenes | |
| Macaca mulatta | ENSMMUG00000001816 | ortholog_one2many | 2 retrogenes | |
| Monodelphis domestica | ENSMODG00000019445 | ortholog_one2many | 3 retrogenes | |
| Mustela putorius furo | ENSMPUG00000017867 | ortholog_one2many | 3 retrogenes | |
| Mus musculus | ENSMUSG00000027479 | possible_ortholog | 2 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000024265 | ortholog_one2many | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000026557 | ortholog_many2many | 2 retrogenes | |
| Ochotona princeps | ENSOPRG00000006707 | ortholog_one2many | 4 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000015887 | ortholog_one2many | 1 retrogene | |
| Sorex araneus | ENSSARG00000002368 | possible_ortholog | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000000833 | ortholog_one2many | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000014809 | ortholog_one2many | 2 retrogenes | |
| Drosophila melanogaster | FBgn0027066 | ortholog_many2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_1424 | 91.48 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_1647 | 94.94 | 65.67 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_1946 | 89.54 | 88.81 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cjac_2077 | 88.15 | 78.36 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_cjac_2084 | 93.33 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_cjac_2366 | 96.08 | 76.12 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_cjac_2861 | 92.57 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_cjac_3259 | 92.31 | 66.79 | Please wait, loading | Please wait, loading | Please wait, loading |
| 9. | retro_cjac_3271 | 92.86 | 93.28 | Please wait, loading | Please wait, loading | Please wait, loading |
| 10. | retro_cjac_3308 | 95.56 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000015601 retrocopies