Parental gene:

ENSCJAG00000015601

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:5:4428580..4452053(-)


>ENSCJAG00000015601
ATGGCAGTGAACGTATACTCAACGTCAGTGACCAGTGATAATCTAAGTCGACATGACATGCTGGCCTGGATCAATGAGTC
TCTGCAGTTGAATCTGACAAAGATTGAACAGTTGTGCTCAGGGGCTGCCTATTGTCAGTTTATGGACATGCTGTTTCCTG
GCTCCATTGCCTTGAAGAAAGTGAAATTCCAAGCTAAGCTAGAACACGAATACATCCAGAACTTCAAAATACTACAAGCG
GGTTTTAAGAGGATGGGTGTTGACAAAATAATTCCTGTGGACAAATTAGTAAAAGGAAAGTTTCAGGACAATTTTGAATT
TGTTCAGTGGTTCAAGAAGTTTTTTGATGCAAACTATGATGGAAAAGACTATGACCCTGTGGCTGCCAGACAAGGTCAAG
AAACTGCGGTGGCTCCCTCCCTCGTTGCTCCAGCTCTGAATAAACCGAAGAAACCTCTTAGTTCTAGTAGTGCAGCTCCC
CAGAGGCCCATCTCAACACAGAGAACTGCTGCGGCTCCTAAGGCTGGCCCTGGTGTGGTGCGAAAGAACCCTGGTGTGGG
CAATGGGGATGACGAGGCAGCTGAGTTGATGCAGCAGGTCAACGTATTGAAACTTACTGTTGAAGACTTGGAGAAAGAGA
GGGACTTCTACTTCGGAAAGCTACGGAACATTGAATTGATTTGCCAGGAGAATGAGGGGGAAAACGACCCTGTATTGCAG
AGGATTGTAGACATTCTGTATGCCACAGATGAAGGCTTTGTGATACCTGATGAAGGGGGCCCACAGGAGGAGCAGGAAGA
GTATTGA

Library Parental gene expression (RPM)
SRP051959_colon 28 .75 RPM
SRP051959_heart 18 .61 RPM
SRP051959_kidney 25 .65 RPM
SRP051959_liver 9 .64 RPM
SRP051959_lung 25 .88 RPM
SRP051959_lymph_node 28 .97 RPM
SRP051959_skeletal_muscle 12 .43 RPM
SRP051959_spleen 24 .77 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000013238 ortholog_one2many 3 retrogenes
retro_amel_1187, retro_amel_1436, retro_amel_848,
Canis familiaris ENSCAFG00000007306 ortholog_many2many 13 retrogenes
retro_cfam_1338, retro_cfam_1554, retro_cfam_1665, retro_cfam_1804, retro_cfam_1808, retro_cfam_2084, retro_cfam_2163, retro_cfam_241, retro_cfam_547, retro_cfam_762, retro_cfam_774, retro_cfam_806, retro_cfam_913,
Choloepus hoffmanni ENSCHOG00000006737 ortholog_one2many 10 retrogenes
retro_chof_1064, retro_chof_1075, retro_chof_1113, retro_chof_1138, retro_chof_1514, retro_chof_2248, retro_chof_2557, retro_chof_2591, retro_chof_643, retro_chof_704,
Cavia porcellus ENSCPOG00000023542 possible_ortholog 1 retrogene
retro_cpor_194,
Dasypus novemcinctus ENSDNOG00000007431 ortholog_one2many 2 retrogenes
retro_dnov_730, retro_dnov_822,
Erinaceus europaeus ENSEEUG00000004499 possible_ortholog 1 retrogene
retro_eeur_179,
Echinops telfairi ENSETEG00000017922 possible_ortholog 4 retrogenes
retro_etel_1747, retro_etel_1778, retro_etel_2148, retro_etel_222,
Felis catus ENSFCAG00000007783 ortholog_one2many 2 retrogenes
retro_fcat_1335, retro_fcat_970,
Gorilla gorilla ENSGGOG00000022496 ortholog_many2many 1 retrogene
retro_ggor_2765,
Loxodonta africana ENSLAFG00000015453 ortholog_one2many 1 retrogene
retro_lafr_975,
Microcebus murinus ENSMICG00000001965 ortholog_one2many 3 retrogenes
retro_mmur_1125, retro_mmur_1179, retro_mmur_129,
Myotis lucifugus ENSMLUG00000016403 ortholog_one2many 6 retrogenes
retro_mluc_1212, retro_mluc_1811, retro_mluc_1812, retro_mluc_1883, retro_mluc_635, retro_mluc_931,
Macaca mulatta ENSMMUG00000001816 ortholog_one2many 2 retrogenes
retro_mmul_1938, retro_mmul_2374,
Monodelphis domestica ENSMODG00000019445 ortholog_one2many 3 retrogenes
retro_mdom_1213, retro_mdom_1946, retro_mdom_431,
Mustela putorius furo ENSMPUG00000017867 ortholog_one2many 3 retrogenes
retro_mputfur_1240, retro_mputfur_1304, retro_mputfur_341,
Mus musculus ENSMUSG00000027479 possible_ortholog 2 retrogenes
retro_mmus_3160, retro_mmus_3466,
Oryctolagus cuniculus ENSOCUG00000024265 ortholog_one2many 1 retrogene
retro_ocun_582,
Otolemur garnettii ENSOGAG00000026557 ortholog_many2many 2 retrogenes
retro_ogar_226, retro_ogar_2290,
Ochotona princeps ENSOPRG00000006707 ortholog_one2many 4 retrogenes
retro_opri_1161, retro_opri_1162, retro_opri_1212, retro_opri_807,
Pteropus vampyrus ENSPVAG00000015887 ortholog_one2many 1 retrogene
retro_pvam_1035,
Sorex araneus ENSSARG00000002368 possible_ortholog 1 retrogene
retro_sara_380,
Tarsius syrichta ENSTSYG00000000833 ortholog_one2many 1 retrogene
retro_tsyr_2018,
Tursiops truncatus ENSTTRG00000014809 ortholog_one2many 2 retrogenes
retro_ttru_1683, retro_ttru_1917,
Drosophila melanogaster FBgn0027066 ortholog_many2many 1 retrogene
retro_dmel_83,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1424 91.48 100.00
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2. retro_cjac_1647 94.94 65.67
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3. retro_cjac_1946 89.54 88.81
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4. retro_cjac_2077 88.15 78.36
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5. retro_cjac_2084 93.33 100.00
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6. retro_cjac_2366 96.08 76.12
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7. retro_cjac_2861 92.57 100.00
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8. retro_cjac_3259 92.31 66.79
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9. retro_cjac_3271 92.86 93.28
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10. retro_cjac_3308 95.56 100.00
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Download FASTA sequences of all ENSCJAG00000015601 retrocopies