RetrogeneDB ID: retro_chof_60

Retrocopy location

• Organism: Sloth (Choloepus hoffmanni)
• Coordinates: scaffold_121387:661..994(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSCHOG00000011094
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSCHOG00000006234
• Aliases: None
• Description: None

Sequence

>retro_chof_60
ATGTCAGATGCAGCTATGGATACCAGCTCTGAAATCACCACCAAGGACTTATATGAGAAGAAGGAAGTTGTGGAGCATGC
AGAGAATGGAAGAGATGCACCTGCTAATGGGAATGCTAACAAAAAAAATGGGGAACAAGGGGCTGACAATGAGGTAGATG
AAGAAGAGGAAGAAGGTGAGGAGGAAGAGGAAGAGGAGGTAGAAGGAGATGGTGAAGAAGAGGGTGGAGATGAAGATGAG
GAAACTGAGGCTGCTATGGGCAAATGGACCACTGAAGATGATGAGGATGATGTTGTGGACACCAAGAAGCAGAAGACTGA
TGAGGGTGACAAG

Alignment

ORF - retro_chof_60 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 82.43 %
• Parental protein coverage: 89.16 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  EGVEEAENGRDAPANGNANEENGEQEADNEVDEEEEEGGEEEEEEEEGDGEEEDGDEDEEAEAATGKRAA
          E.VE.AENGRDAPANGNAN..NGEQ.ADNEVDEEEEEG.EEEEEE.EGDGEEE.GDEDEE.EAA.GK...
Retrocopy EVVEHAENGRDAPANGNANKKNGEQGADNEVDEEEEEGEEEEEEEVEGDGEEEGGDEDEETEAAMGKWTT

Parental  EDDE
          EDDE
Retrocopy EDDE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Choloepus hoffmanni was not studied using RNA-Seq expression data.

ChIP-Seq

Choloepus hoffmanni was not studied using ChIP-Seq data.

EST

Choloepus hoffmanni was not studied using EST data.

TSS

Choloepus hoffmanni was not studied using FANTOM5 data.

Lab

retro_chof_60 was not experimentally validated.

Homology

Retrocopy orthology:

Choloepus hoffmanni does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000016287	1 retrocopy	retro_amel_1811,
Choloepus hoffmanni	ENSCHOG00000006234	1 retrocopy	retro_chof_60 ,
Cavia porcellus	ENSCPOG00000022634	1 retrocopy	retro_cpor_916,
Procavia capensis	ENSPCAG00000000300	1 retrocopy	retro_pcap_287,
Tursiops truncatus	ENSTTRG00000009156	2 retrocopies	retro_ttru_1596, retro_ttru_1609,