RetrogeneDB ID: retro_ttru_1609

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: scaffold_59883:277..489(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSTTRG00000021390
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSTTRG00000009156
• Aliases: None
• Description: None

Sequence

>retro_ttru_1609
GAAGAAGTTGTGGAGGAGGCGGAGAATGGGAGAGGGGCACCTGCTCGTGGGAATGCTAGCGAGGAAAACGGGGAGCAGGA
GGCCGACAGCAAGGTTGATGAAGAAGCAGAGGACATGAAGGTGCGGAGGCCGACGCAGCTACGTGCAGACGGGCAGCTGA
AGATGAGGATGATGACGACGTTGACACCAAGAAGCGGAAGACCGATGAGGAC

Alignment

ORF - retro_ttru_1609 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 53.33 %
• Parental protein coverage: 79.57 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  EEGVEEAENGREAPANGNANEENGEQEADNEVDEEEEEGGEEEEEEEEGDGE-EEDGDEDEEAEAATGKR
          EE.VEEAENGR.APA.GNA.EENGEQEAD..VDEE.E............DG...ED.D.D......T.KR
Retrocopy EEVVEEAENGRGAPARGNASEENGEQEADSKVDEEAEDMKVRRPTQLRADGQ<AEDEDDD---DVDTKKR

Parental  AAEDD
          ....D
Retrocopy KTDED

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_1609 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_1609 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000006234	1 retrocopy	retro_chof_60,
Procavia capensis	ENSPCAG00000000300	1 retrocopy	retro_pcap_287,
Tursiops truncatus	ENSTTRG00000009156	2 retrocopies	retro_ttru_1596, retro_ttru_1609 ,