RetrogeneDB ID: | retro_chof_815 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_151244:852..1419(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ANXA2 | ||
Ensembl ID: | ENSCHOG00000012143 | ||
Aliases: | None | ||
Description: | annexin A2 [Source:HGNC Symbol;Acc:537] |
Percent Identity: | 84.66 % |
Parental protein coverage: | 65.4 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | YKTDLEKDIISDTSGDFRKLMVALAKGRRAEDGSVIDYELIDQDARDLYDAGVKRKGTDVPKWISIMTER |
YKTDLEKDI.SD.SGDF.KLMVALAKGR..EDGSVI..ELIDQDA.DLY.AG.K.KGTDVP.WISI..E. | |
Retrocopy | YKTDLEKDIVSDISGDFCKLMVALAKGR*VEDGSVICHELIDQDA*DLYAAGMKGKGTDVPMWISITNE* |
Parental | SVCHLQKVFERYKSYSPYDMLESIKKEVKGDLENAFLNLVQCIQNKPLYFADRLYDSMKGKGTRDKVLIR |
SVC.LQKV.ERYK.YSPYDMLE.IK.EVKGDLE.AFLNLVQCIQNK.LYFAD.LYDSMKGKGT.DKVLIR | |
Retrocopy | SVCQLQKVSERYKNYSPYDMLENIKNEVKGDLESAFLNLVQCIQNKALYFADQLYDSMKGKGTCDKVLIR |
Parental | IMVSRSEVDMLKIRSEFKRKYGKSLYYYIQQDTKGDYQKALLYLCGGDD |
IM.S.SE.DMLKIRSEFKRKYGKSLYYYI.QDTKGDYQKALLYLCG.DD | |
Retrocopy | IMASCSEADMLKIRSEFKRKYGKSLYYYIKQDTKGDYQKALLYLCGRDD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000016686 | 3 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000012143 | 3 retrocopies |
retro_chof_1028, retro_chof_1965, retro_chof_815 ,
|
Felis catus | ENSFCAG00000007862 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000008980 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000002464 | 3 retrocopies | |
Monodelphis domestica | ENSMODG00000011604 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000000762 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000007132 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000011401 | 1 retrocopy |