RetrogeneDB ID: | retro_cjac_1081 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 13:32688457..32688958(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCJAG00000002841 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBE2H | ||
Ensembl ID: | ENSCJAG00000010520 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 78.49 % |
Parental protein coverage: | 91.01 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | KLIESKHEVTILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTV |
KLIESKHEVTILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKI.HPNIDEASGT. | |
Retrocopy | KLIESKHEVTILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKILHPNIDEASGTL |
Parental | CLDVINQTWTALYGNDLSDCFKNDGLPRVIVYKGEIDPDEITPNIICVYLARRELTFVEIKQYIQKYATE |
CLDVINQTWTALY..DL...F...G.P....Y...IDP..........YL.R.E.....IK.YIQKYATE | |
Retrocopy | CLDVINQTWTALY--DLTNIFESFG-PQFLAYPNPIDP--LNGDAAAMYLHRPEEYKQKIKEYIQKYATE |
Parental | EALKEQEEGTGDSSSESSMSDFSEDEAQDMEL |
EALKEQEEGTGDSS.ESSMSDFSEDEAQDMEL | |
Retrocopy | EALKEQEEGTGDSSLESSMSDFSEDEAQDMEL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 2 .60 RPM | 7 .08 RPM |
SRP051959_heart | 3 .47 RPM | 5 .82 RPM |
SRP051959_kidney | 4 .30 RPM | 7 .70 RPM |
SRP051959_liver | 2 .32 RPM | 4 .01 RPM |
SRP051959_lung | 4 .28 RPM | 6 .75 RPM |
SRP051959_lymph_node | 2 .69 RPM | 7 .44 RPM |
SRP051959_skeletal_muscle | 2 .27 RPM | 4 .39 RPM |
SRP051959_spleen | 4 .52 RPM | 8 .42 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000003605 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000010520 | 1 retrocopy |
retro_cjac_1081 ,
|
Homo sapiens | ENSG00000186591 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012685 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000017997 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000048205 | 2 retrocopies |