RetrogeneDB ID: | retro_cjac_1249 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 14:10186767..10187379(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL14 | ||
Ensembl ID: | ENSCJAG00000017884 | ||
Aliases: | None | ||
Description: | ribosomal protein L14 [Source:HGNC Symbol;Acc:10305] |
Percent Identity: | 86.06 % |
Parental protein coverage: | 95.35 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MVFRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPCTQVRRQAMPFKCMQLTDFILKFPHSARQ |
MVFR.FV.VGRVAYV.FGPHAGK.VAIVDVIDQNRALVDGPCTQVRRQAMPFKCMQLTDFILKFPHSARQ | |
Retrocopy | MVFRCFVKVGRVAYVFFGPHAGK*VAIVDVIDQNRALVDGPCTQVRRQAMPFKCMQLTDFILKFPHSARQ |
Parental | KYVRQAWQKADINTKWAATRWAKKIEAREKKAKMTDFDRFKVMKAKKMRNRIIKNEVKKLQKAALLKASP |
KYVRQAWQKADIN.KWAATRWAKKIEARE.KAKMTDFD..KVMKAKKMRNRIIKNEVKKLQKAALLKASP | |
Retrocopy | KYVRQAWQKADINMKWAATRWAKKIEARERKAKMTDFDHLKVMKAKKMRNRIIKNEVKKLQKAALLKASP |
Parental | KKAPAAKAAAAAAAQVPAKK-MTAAGKRAPAQKATGQKA-PAQKATGQK-AAPAPKAEKGQKAPAKKA |
KKAPAAKAAAAAAA.VPAK...TA.GK.APAQKATGQKA.PA.K....K..APA.KA....KA..KKA | |
Retrocopy | KKAPAAKAAAAAAAKVPAKR>TTA-GKKAPAQKATGQKAVPAPKLRRVK<KAPAKKA-PAPKASGKKA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .09 RPM | 106 .63 RPM |
SRP051959_heart | 0 .14 RPM | 111 .64 RPM |
SRP051959_kidney | 0 .09 RPM | 140 .06 RPM |
SRP051959_liver | 0 .04 RPM | 135 .51 RPM |
SRP051959_lung | 0 .10 RPM | 168 .58 RPM |
SRP051959_lymph_node | 0 .18 RPM | 249 .78 RPM |
SRP051959_skeletal_muscle | 0 .09 RPM | 92 .46 RPM |
SRP051959_spleen | 0 .06 RPM | 202 .94 RPM |