Parental gene:

RPL14, ENSPTRG00000011963

Aliases:None
Description:ribosomal protein L14 [Source:HGNC Symbol;Acc:10305]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:3:41093829..41099154(+)


>ENSPTRG00000011963
ATGGTGTTCAGGCGCTTCGTGGAGGTTGGCCGGGTGGCCTATGTCTCCTTTGGACCTCATGCCGGAAAATTGGTCGCGAT
TGTAGATGTTATTGATCAGAACAGGGCTTTGGTCGATGGACCTTGCACTCAAGTGAGGAGACAGGCCATGCCTTTCAAGT
GCATGCAGCTCACTGATTTCATCCTCAAGTTTCCGCACAGTGCCCGCCAGAAGTATGTCCGACAAGCCTGGCAGAAGGCA
GACATCAATACAAAATGGGCAGCCACACGATGGGCCAAGAAGATTGAAGCCAGAGAAAGGAAAGCCAAGATGACAGATTT
TGATCGTTTTAAAGTTATGAAGGCAAAGAAAATGAGGAACAGAATAATCAAGAATGAAGTTAAGAAGCTTCAAAAGGCAG
CTCTCCTGAAAGCTTCTCCCAAAAAAGCACCTGGTACTAAGGGTACTGCTGCTGCTGCTGCTGCTAAAGTTCCAGCAAAA
AAGATCACCGCCGCGAGTAAAAAGGCTCCAGCCCAGAAGGTTCCTGCCCAGAAAGCCACAGGCCAGAAAGCAGCGCCTGC
TCCAAAAGCTCAGAAGGGTCAAAAAGCTCCAGCCCAGAAAGCACCTGCTCCAAAGGCATCTGGCAAGAAAGCATAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 155 .28 RPM
SRP007412_cerebellum 275 .50 RPM
SRP007412_heart 206 .56 RPM
SRP007412_kidney 317 .22 RPM
SRP007412_liver 341 .68 RPM
SRP007412_testis 136 .37 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000001709 ortholog_one2one 4 retrogenes
retro_amel_1876, retro_amel_1933, retro_amel_296, retro_amel_660,
Canis familiaris ENSCAFG00000005138 ortholog_one2many 1 retrogene
retro_cfam_31,
Callithrix jacchus ENSCJAG00000017884 ortholog_one2one 9 retrogenes
retro_cjac_1249, retro_cjac_1393, retro_cjac_1835, retro_cjac_2138, retro_cjac_2139, retro_cjac_2332, retro_cjac_2797, retro_cjac_3240, retro_cjac_630,
Cavia porcellus ENSCPOG00000000711 ortholog_one2one 1 retrogene
retro_cpor_529,
Equus caballus ENSECAG00000026813 ortholog_one2one 2 retrogenes
retro_ecab_377, retro_ecab_743,
Echinops telfairi ENSETEG00000012894 ortholog_one2many 6 retrogenes
retro_etel_2117, retro_etel_2155, retro_etel_251, retro_etel_315, retro_etel_356, retro_etel_387,
Felis catus ENSFCAG00000015655 ortholog_one2one 4 retrogenes
retro_fcat_1000, retro_fcat_1457, retro_fcat_587, retro_fcat_671,
Homo sapiens ENSG00000188846 ortholog_one2one 6 retrogenes
retro_hsap_1015, retro_hsap_1047, retro_hsap_2796, retro_hsap_3104, retro_hsap_3352, retro_hsap_4777,
Gorilla gorilla ENSGGOG00000025958 ortholog_one2one 3 retrogenes
retro_ggor_122, retro_ggor_1945, retro_ggor_2272,
Latimeria chalumnae ENSLACG00000015639 ortholog_one2one 1 retrogene
retro_lcha_29,
Microcebus murinus ENSMICG00000009217 ortholog_one2one 4 retrogenes
retro_mmur_1218, retro_mmur_1352, retro_mmur_279, retro_mmur_3,
Myotis lucifugus ENSMLUG00000014429 ortholog_one2one 4 retrogenes
retro_mluc_1294, retro_mluc_2263, retro_mluc_420, retro_mluc_563,
Monodelphis domestica ENSMODG00000015262 ortholog_one2one 2 retrogenes
retro_mdom_1499, retro_mdom_1939,
Mustela putorius furo ENSMPUG00000017961 ortholog_one2many 1 retrogene
retro_mputfur_90,
Mus musculus ENSMUSG00000025794 ortholog_one2one 3 retrogenes
retro_mmus_2904, retro_mmus_2929, retro_mmus_3011,
Nomascus leucogenys ENSNLEG00000005682 ortholog_one2one 2 retrogenes
retro_nleu_763, retro_nleu_918,
Oryctolagus cuniculus ENSOCUG00000010309 ortholog_one2one 3 retrogenes
retro_ocun_410, retro_ocun_464, retro_ocun_656,
Pteropus vampyrus ENSPVAG00000013914 ortholog_one2one 7 retrogenes
retro_pvam_1108, retro_pvam_1413, retro_pvam_246, retro_pvam_446, retro_pvam_683, retro_pvam_903, retro_pvam_904,
Rattus norvegicus ENSRNOG00000019007 ortholog_one2many 4 retrogenes
retro_rnor_2268, retro_rnor_2620, retro_rnor_415, retro_rnor_591,
Sorex araneus ENSSARG00000003974 ortholog_one2one 2 retrogenes
retro_sara_349, retro_sara_504,
Sarcophilus harrisii ENSSHAG00000001591 ortholog_one2one 5 retrogenes
retro_shar_397, retro_shar_539, retro_shar_696, retro_shar_737, retro_shar_788,
Sus scrofa ENSSSCG00000011272 ortholog_one2many 2 retrogenes
retro_sscr_521, retro_sscr_63,
Tarsius syrichta ENSTSYG00000002161 ortholog_one2one 5 retrogenes
retro_tsyr_1036, retro_tsyr_1404, retro_tsyr_176, retro_tsyr_361, retro_tsyr_956,
Tursiops truncatus ENSTTRG00000006708 ortholog_one2one 1 retrogene
retro_ttru_113,
Xenopus tropicalis ENSXETG00000022018 ortholog_one2many 1 retrogene
retro_xtro_3,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_713 74.06 100.00
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2. retro_ptro_1893 78.45 54.98
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3. retro_ptro_2100 85.45 99.53
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4. retro_ptro_2135 73.79 68.72
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Download FASTA sequences of all ENSPTRG00000011963 retrocopies