RetrogeneDB ID: | retro_cjac_630 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 1:157724852..157725484(-) | ||
Located in intron of: | ENSCJAG00000020473 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL14 | ||
Ensembl ID: | ENSCJAG00000017884 | ||
Aliases: | None | ||
Description: | ribosomal protein L14 [Source:HGNC Symbol;Acc:10305] |
Percent Identity: | 84.26 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MVFRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPCTQVRRQAMPFKCMQLTDFILKFPHSARQ |
MVFRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPCTQVRRQAMPFKCMQLT.FILKFPHSARQ | |
Retrocopy | MVFRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPCTQVRRQAMPFKCMQLTNFILKFPHSARQ |
Parental | KYVRQAWQKADINTKWAATRWAKKIEAREKKAKMTDFDRFKVMKAKKMRNRIIKNEVKKLQKAALLK-AS |
KYVRQAWQKADINTKWAAT.WAKKIEAREKKAKMTDFDRFKVMKAKKMRNRIIKNEVKKLQKAALLK..S | |
Retrocopy | KYVRQAWQKADINTKWAAT*WAKKIEAREKKAKMTDFDRFKVMKAKKMRNRIIKNEVKKLQKAALLK<SS |
Parental | PKKAPAAKAAAAAAAQVPAKKMTAAGKRAPAQKATGQKAPAQKATGQKAAPAPKAEKGQKAPAKKAPAPK |
PKKA...........QVPAKKMTAAGKRAPAQKATGQ..P........A....K..K...APAKKAPAPK | |
Retrocopy | PKKAXXXXXXXXXXXQVPAKKMTAAGKRAPAQKATGQSCP-EPPKAAPAPKTEKGQK---APAKKAPAPK |
Parental | ASGKKA |
ASGKKA | |
Retrocopy | ASGKKA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 2 .04 RPM | 106 .63 RPM |
SRP051959_heart | 1 .74 RPM | 111 .64 RPM |
SRP051959_kidney | 2 .82 RPM | 140 .06 RPM |
SRP051959_liver | 2 .36 RPM | 135 .51 RPM |
SRP051959_lung | 3 .37 RPM | 168 .58 RPM |
SRP051959_lymph_node | 6 .12 RPM | 249 .78 RPM |
SRP051959_skeletal_muscle | 1 .42 RPM | 92 .46 RPM |
SRP051959_spleen | 4 .08 RPM | 202 .94 RPM |