RetrogeneDB ID: | retro_cjac_1500 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 16:21749069..21749429(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SPCS2 | ||
Ensembl ID: | ENSCJAG00000015576 | ||
Aliases: | None | ||
Description: | signal peptidase complex subunit 2 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:28962] |
Percent Identity: | 97.5 % |
Parental protein coverage: | 53.1 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | FPESKPVLALCVISYFVMMGILTIYTSYKEKSIFLVAHRKDPTGMDPDDIWQLSSSLKRFDDKYTLKLTF |
FPESKP.LALC.ISYFVMMGILTIYTSYKEKSIFLVAHRKD.TGMDPDDIWQLSSSLKRFDDKYTLKLTF | |
Retrocopy | FPESKPILALCIISYFVMMGILTIYTSYKEKSIFLVAHRKDSTGMDPDDIWQLSSSLKRFDDKYTLKLTF |
Parental | ISGRTKQQREAEFTKSIAKFFDHSGTLVMDAYEPEISRLHDSLATERKIK |
ISGRTKQQREAEFTKSIAKFFDHSGTLVMDAYEPEISRLHDSLATERKIK | |
Retrocopy | ISGRTKQQREAEFTKSIAKFFDHSGTLVMDAYEPEISRLHDSLATERKIK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .00 RPM | 14 .64 RPM |
SRP051959_heart | 0 .04 RPM | 13 .59 RPM |
SRP051959_kidney | 0 .02 RPM | 13 .25 RPM |
SRP051959_liver | 0 .06 RPM | 23 .39 RPM |
SRP051959_lung | 0 .00 RPM | 11 .75 RPM |
SRP051959_lymph_node | 0 .05 RPM | 13 .95 RPM |
SRP051959_skeletal_muscle | 0 .02 RPM | 16 .09 RPM |
SRP051959_spleen | 0 .02 RPM | 17 .96 RPM |