RetrogeneDB ID: | retro_dord_423 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | scaffold_17773:28874..29359(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Spcs2 | ||
Ensembl ID: | ENSDORG00000009679 | ||
Aliases: | None | ||
Description: | signal peptidase complex subunit 2 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1913874] |
Percent Identity: | 54.91 % |
Parental protein coverage: | 73.25 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | LDDSAKKVLLEKYKYVENFGLIDGRLAICTISCFFAIVALIWDYMHPFPESKPVLALCVISSYFVMMGI- |
L..SA.K....K....ENFGLID..L.IC.I.CF.A.VAL.WD.M..F.ESKPVLAL..I..YF..M... | |
Retrocopy | LNVSARKIC*-KSTSMENFGLIDSHLGICPI-CFLAVVALNWDFMCTFQESKPVLALYSI-PYFAVMQM< |
Parental | LTIYTSYKEKSIFLVAHRK--DPTGMDPDDIWQLSSSLK-RFDDK-YTLKLTFISGRTKQQREAEFTRSI |
..IY.SY.EKS.F.VAHRK...PTG.DPD...QLSSSLK.R..D....L.L.FIS.R.KQ..EAE.T.S. | |
Retrocopy | VPIYISYEEKSVFPVAHRKVDPPTGVDPDAV*QLSSSLK<RLSDR<IILELAFISERPKQLQEAESTKSC |
Parental | AKFFDHSGTLVMDAYEPEI-SRLHDSLATERKI |
...F.....LVM..Y.P.I.SR...SL.TERKI | |
Retrocopy | ---F*PQQVLVMSVYGPQI<SRCYHSLVTERKI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |