RetrogeneDB ID: | retro_cjac_1995 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 20:25612836..25613482(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBE2S | ||
Ensembl ID: | ENSCJAG00000000874 | ||
Aliases: | None | ||
Description: | ubiquitin-conjugating enzyme E2S [Source:HGNC Symbol;Acc:17895] |
Percent Identity: | 86.36 % |
Parental protein coverage: | 97.3 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | MNSNVENLPPHIIRLVYKEVTTLTTDPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGVFRMKLLLGKDF |
MNSNV.NLPPHIIRLVYKEVTTLT.DPP.GIKVFPN.EDLT.LQVTIEGPEGTPYA.G.F.MKLLLGKDF | |
Retrocopy | MNSNVKNLPPHIIRLVYKEVTTLTGDPPNGIKVFPNKEDLTNLQVTIEGPEGTPYARGLFCMKLLLGKDF |
Parental | PASPPKGYFLTKIFHPNVGANGEICV-NVLKRDWTAELGIRHVLLTIKCLLIHPNPESAL-NEEAGRLLL |
.ASPPKGY.LTKIFHPNVGANGEI...NVLKRDW.AELGI.H.LLTI.CLLIHPNPESA..NEEAGRLLL | |
Retrocopy | LASPPKGYILTKIFHPNVGANGEIWA<NVLKRDWKAELGI*HMLLTITCLLIHPNPESAT>NEEAGRLLL |
Parental | ENYEEYAAR-ARLLTEIHG-GAGGPSGRAEAGRALASGTAASSTDPGAPGGPGGAEGPMAKKHAGERDKK |
ENYEEYAA..A.LLTEIHG.GAGGPSGR.E...ALASGTAASSTDPGAPGGPGGAEGPMA.KHAGE.DKK | |
Retrocopy | ENYEEYAAQ<APLLTEIHG<GAGGPSGRTEVVCALASGTAASSTDPGAPGGPGGAEGPMANKHAGEHDKK |
Parental | LAAKKKTDKK |
LAAKKKTDK. | |
Retrocopy | LAAKKKTDKE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .04 RPM | 5 .15 RPM |
SRP051959_heart | 0 .09 RPM | 4 .07 RPM |
SRP051959_kidney | 0 .04 RPM | 2 .06 RPM |
SRP051959_liver | 0 .02 RPM | 1 .06 RPM |
SRP051959_lung | 0 .07 RPM | 3 .76 RPM |
SRP051959_lymph_node | 0 .07 RPM | 3 .58 RPM |
SRP051959_skeletal_muscle | 0 .04 RPM | 6 .09 RPM |
SRP051959_spleen | 0 .00 RPM | 3 .42 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000000874 | 3 retrocopies |
retro_cjac_1995 , retro_cjac_3689, retro_cjac_406,
|
Callithrix jacchus | ENSCJAG00000005098 | 2 retrocopies | |
Homo sapiens | ENSG00000108106 | 1 retrocopy | |
Mus musculus | ENSMUSG00000060860 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000011507 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000016930 | 2 retrocopies |