Parental gene:

UBE2A, ENSCJAG00000005098

Aliases:None
Description:ubiquitin-conjugating enzyme E2A [Source:HGNC Symbol;Acc:12472]
Organism:Marmoset (Callithrix jacchus)
Coordinates:X:107646188..107658306(+)


>ENSCJAG00000005098
ATGTCCACCCCGGCTCGCCGGCGCCTCATGCGGGACTTCAAGAGGTTACAGGAGGATCCTCCAGCCGGAGTCAGCGGGGC
TCCGTCCGAGAACAACATAATGGTGTGGAACGCGGTTATTTTCGGGCCTGAAGGGACCCCATTTGAGGATGGAACATTTA
AACTTACAATAGAATTCACTGAAGAATATCCAAATAAGCCACCTACAGTTAGATTTGTCTCTAAGATGTTCCATCCAAAT
GTCTATGCAGATGGTAGTATATGTCTGGATATACTTCAAAACCGTTGGAGTCCAACCTATGATGTGTCTTCGATTTTAAC
ATCCATACAGTCTCTATTGGATGAACCCAATCCCAATAGTCCAGCAAACAGCCAGGCTGCTCAGCTGTACCAGGAGAACA
AGCGGGAATATGAAAAGCGTGTTTCTGCAATAGTAGAACAAAGCTGGCGCGATTGTTGA

Library Parental gene expression (RPM)
SRP051959_colon 9 .65 RPM
SRP051959_heart 9 .00 RPM
SRP051959_kidney 12 .00 RPM
SRP051959_liver 6 .54 RPM
SRP051959_lung 11 .06 RPM
SRP051959_lymph_node 10 .16 RPM
SRP051959_skeletal_muscle 13 .50 RPM
SRP051959_spleen 10 .00 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000001079 ortholog_one2one 1 retrogene
retro_chof_1316,
Callithrix jacchus ENSCJAG00000000874 within_species_paralog 3 retrogenes
retro_cjac_1995, retro_cjac_3689, retro_cjac_406,
Cavia porcellus ENSCPOG00000011908 ortholog_one2one 1 retrogene
retro_cpor_489,
Dasypus novemcinctus ENSDNOG00000007060 ortholog_one2one 1 retrogene
retro_dnov_215,
Macropus eugenii ENSMEUG00000003026 ortholog_one2one 1 retrogene
retro_meug_2180,
Monodelphis domestica ENSMODG00000010209 ortholog_one2one 1 retrogene
retro_mdom_341,
Oryctolagus cuniculus ENSOCUG00000016739 ortholog_one2many 1 retrogene
retro_ocun_183,
Otolemur garnettii ENSOGAG00000024335 ortholog_one2one 1 retrogene
retro_ogar_3203,
Procavia capensis ENSPCAG00000005045 ortholog_one2one 1 retrogene
retro_pcap_222,
Sus scrofa ENSSSCG00000012621 ortholog_one2one 1 retrogene
retro_sscr_29,
Tarsius syrichta ENSTSYG00000000888 ortholog_one2one 1 retrogene
retro_tsyr_676,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1180 94.25 57.24
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2. retro_cjac_3862 94.74 100.00
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Download FASTA sequences of all ENSCJAG00000005098 retrocopies