Parental gene: | UBE2A, ENSCJAG00000005098 |
| Aliases: | None |
| Description: | ubiquitin-conjugating enzyme E2A [Source:HGNC Symbol;Acc:12472] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | X:107646188..107658306(+) |
>ENSCJAG00000005098
ATGTCCACCCCGGCTCGCCGGCGCCTCATGCGGGACTTCAAGAGGTTACAGGAGGATCCTCCAGCCGGAGTCAGCGGGGC
TCCGTCCGAGAACAACATAATGGTGTGGAACGCGGTTATTTTCGGGCCTGAAGGGACCCCATTTGAGGATGGAACATTTA
AACTTACAATAGAATTCACTGAAGAATATCCAAATAAGCCACCTACAGTTAGATTTGTCTCTAAGATGTTCCATCCAAAT
GTCTATGCAGATGGTAGTATATGTCTGGATATACTTCAAAACCGTTGGAGTCCAACCTATGATGTGTCTTCGATTTTAAC
ATCCATACAGTCTCTATTGGATGAACCCAATCCCAATAGTCCAGCAAACAGCCAGGCTGCTCAGCTGTACCAGGAGAACA
AGCGGGAATATGAAAAGCGTGTTTCTGCAATAGTAGAACAAAGCTGGCGCGATTGTTGA
ATGTCCACCCCGGCTCGCCGGCGCCTCATGCGGGACTTCAAGAGGTTACAGGAGGATCCTCCAGCCGGAGTCAGCGGGGC
TCCGTCCGAGAACAACATAATGGTGTGGAACGCGGTTATTTTCGGGCCTGAAGGGACCCCATTTGAGGATGGAACATTTA
AACTTACAATAGAATTCACTGAAGAATATCCAAATAAGCCACCTACAGTTAGATTTGTCTCTAAGATGTTCCATCCAAAT
GTCTATGCAGATGGTAGTATATGTCTGGATATACTTCAAAACCGTTGGAGTCCAACCTATGATGTGTCTTCGATTTTAAC
ATCCATACAGTCTCTATTGGATGAACCCAATCCCAATAGTCCAGCAAACAGCCAGGCTGCTCAGCTGTACCAGGAGAACA
AGCGGGAATATGAAAAGCGTGTTTCTGCAATAGTAGAACAAAGCTGGCGCGATTGTTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 10 .00 RPM |
| SRP051959_skeletal_muscle | 13 .50 RPM |
| SRP051959_lymph_node | 10 .16 RPM |
| SRP051959_lung | 11 .06 RPM |
| SRP051959_liver | 6 .54 RPM |
| SRP051959_kidney | 12 .00 RPM |
| SRP051959_heart | 9 .00 RPM |
| SRP051959_colon | 9 .65 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000001079 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000000874 | within_species_paralog | 3 retrogenes | |
| Cavia porcellus | ENSCPOG00000011908 | ortholog_one2one | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000007060 | ortholog_one2one | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000003026 | ortholog_one2one | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000010209 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000016739 | ortholog_one2many | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000024335 | ortholog_one2one | 1 retrogene | |
| Procavia capensis | ENSPCAG00000005045 | ortholog_one2one | 1 retrogene | |
| Sus scrofa | ENSSSCG00000012621 | ortholog_one2one | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000000888 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_1180 | 94.25 | 57.24 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_3862 | 94.74 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000005098 retrocopies