RetrogeneDB ID: | retro_cjac_2358 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 4:99791753..99792520(+) | ||
Located in intron of: | ENSCJAG00000001507 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DCUN1D1 | ||
Ensembl ID: | ENSCJAG00000005148 | ||
Aliases: | None | ||
Description: | DCN1, defective in cullin neddylation 1, domain containing 1 [Source:HGNC Symbol;Acc:18184] |
Percent Identity: | 81.61 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 3 |
Parental | NKLKSSQKDKVRQFMIFTQSSEKTAVSCLSQNDWKLDVATDNFFQNPE-LYIRESVKGSLDRKKLEQLYN |
NKLKSSQK.KV.Q.MIFTQSSEK.A..C..QNDWKLD.ATDNF.QN...L.I.ESVK.SLDRKKL.QLYN | |
Retrocopy | NKLKSSQKGKVCQVMIFTQSSEKAAANCIFQNDWKLD-ATDNFCQNSH<LHI*ESVK*SLDRKKLKQLYN |
Parental | RYKDPQDENKIGIDGIQQFCDDLALDPASISVLIIAWK-FRAATQCEFSKQEFMDGMTELGCDSIEKLKA |
RYK.PQDEN.IGIDG.QQFCDDLAL.PASISVLIIAW..FRAATQCEFSKQEFMDGMTELGCD..EKLKA | |
Retrocopy | RYKVPQDENTIGIDGTQQFCDDLALNPASISVLIIAWG<FRAATQCEFSKQEFMDGMTELGCDNTEKLKA |
Parental | QIPKMEQELKEPARFKDFYQFTFNFAKNPGQKGLDLEMAIAYWNLVLNGRFKFLDLWNKFLLEHHKRSIP |
Q..K.EQELKEP..F.DF.QFTFNFAKN.GQKGLDLEMAI.Y.N.VL.GR.KFLDLWN.FLLEHHKRSIP | |
Retrocopy | QKSKTEQELKEPE*FNDF*QFTFNFAKNLGQKGLDLEMAISY*NSVLSGRYKFLDLWNNFLLEHHKRSIP |
Parental | KDTWN-LLLDFSTMIADDMSNYDEEGAWPVLIDDFVEFARPQIAGTKSTTV |
KD.WN.LL.D.STMIADDM.NYDEEGAWPVLIDDFVE.A.PQ.AGTK.TTV | |
Retrocopy | KDIWN>LL-DLSTMIADDMPNYDEEGAWPVLIDDFVECAHPQTAGTKCTTV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .60 RPM | 31 .95 RPM |
SRP051959_heart | 0 .51 RPM | 27 .40 RPM |
SRP051959_kidney | 0 .53 RPM | 32 .37 RPM |
SRP051959_liver | 0 .45 RPM | 27 .16 RPM |
SRP051959_lung | 0 .99 RPM | 28 .06 RPM |
SRP051959_lymph_node | 1 .07 RPM | 24 .06 RPM |
SRP051959_skeletal_muscle | 0 .28 RPM | 30 .38 RPM |
SRP051959_spleen | 0 .67 RPM | 30 .36 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000013358 | 14 retrocopies | |
Callithrix jacchus | ENSCJAG00000005148 | 2 retrocopies |
retro_cjac_1423, retro_cjac_2358 ,
|
Callithrix jacchus | ENSCJAG00000018601 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000022086 | 4 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000019073 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000000166 | 1 retrocopy | |
Homo sapiens | ENSG00000043093 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000010767 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000010552 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000002369 | 1 retrocopy | |
Mus musculus | ENSMUSG00000027708 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000005983 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000000658 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000015661 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000012276 | 1 retrocopy |