RetrogeneDB ID: | retro_cjac_2410 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 4:13718588..13718946(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | VAMP7 | ||
Ensembl ID: | ENSCJAG00000016289 | ||
Aliases: | None | ||
Description: | vesicle-associated membrane protein 7 [Source:HGNC Symbol;Acc:11486] |
Percent Identity: | 89.17 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MNSEFSSVLAAQLKHHSENKGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTE-NLVDSSVT |
MNSEFSSVLAAQLK.HSENKGLDKVMETQAQVDE.KGIMVRNIDLVAQ..ERLELLI.KTE.NL.DSSVT | |
Retrocopy | MNSEFSSVLAAQLKPHSENKGLDKVMETQAQVDEMKGIMVRNIDLVAQ*EERLELLIYKTE>NLLDSSVT |
Parental | FKTTSRNLARAMCMKNLKLTIIIIVISIVFIYIIVSPLCGGFTWPSCVKK |
FKTTSRNLARA.CMKNLKLTIIII.I.IVFIY.IVSPLCGGFTWPS..KK | |
Retrocopy | FKTTSRNLARATCMKNLKLTIIIIIILIVFIYVIVSPLCGGFTWPSYAKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .00 RPM | 18 .33 RPM |
SRP051959_heart | 0 .00 RPM | 18 .22 RPM |
SRP051959_kidney | 0 .02 RPM | 33 .10 RPM |
SRP051959_liver | 0 .02 RPM | 23 .87 RPM |
SRP051959_lung | 0 .00 RPM | 23 .86 RPM |
SRP051959_lymph_node | 0 .00 RPM | 17 .67 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 13 .87 RPM |
SRP051959_spleen | 0 .00 RPM | 26 .41 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000016289 | 2 retrocopies |
retro_cjac_1958, retro_cjac_2410 ,
|
Cavia porcellus | ENSCPOG00000024405 | 1 retrocopy | |
Mus musculus | ENSMUSG00000051412 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000001270 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000025036 | 1 retrocopy |