RetrogeneDB ID: | retro_cjac_981 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 12:53235001..53235867(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCJAG00000014769 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000017209 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 74.06 % |
Parental protein coverage: | 91.51 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | GPSRSSFPVGRRHPPTLQMVLEAMQVLQAEEQRQGTSVVAIKRYILRKYPAADGPRFKYLLKNALATGMC |
GPS.SSFPVG.RHP..L.MVL....VLQA.EQ..GTSV.AIK.YIL.KYPA.D..RFKYLLK.ALA.GMC | |
Retrocopy | GPSHSSFPVGCRHPTVLRMVLD---VLQAGEQCRGTSVAAIKLYILQKYPAVDVLRFKYLLKKALAIGMC |
Parental | RGLLARPPHLKTRGATGSFQLVTNHERTIKPRKTASPKAPRRAGVAKGK-VPKKPDEAKEEPPKAGKGKK |
RGLLARP...K..GATGSF.LVT...R.IKPRK.ASPKAPRRAG.AKGK.V.KKPDEAKEE..KAGK.KK | |
Retrocopy | RGLLARPLNSKASGATGSFKLVTKYKRKIKPRKMASPKAPRRAGEAKGK<VFKKPDEAKEEASKAGKVKK |
Parental | GAKSPAEVQKPPLKPGTDTEKACKESSKAKDTEAQPGEAQKVPPKPDKAMRAPSNDSGFSRRAEVKGSWR |
.AK.P.EVQK.PLK.GT.TEKA.K..SKAKDT.AQPGEAQKVPPKPDKAM.A.SN.S.FSR.AE.KGS.R | |
Retrocopy | AAKRPTEVQKFPLKTGTATEKAHKQGSKAKDTKAQPGEAQKVPPKPDKAMQASSNVSRFSRKAEAKGSRR |
Parental | SPGGAEASRKTKAGSKSLRPTVSKVKSGTASLTEKKSVARAKAQS-QAPAPTGAGQGPNAKGASAKAGGS |
S.G.AEA.R.TK.GS.S.RPTVSKVK.G.AS.T.KK.VA.AKAQ.....A..GAGQG.NAKGASAKA.GS | |
Retrocopy | SQGDAEACRNTKTGSRSSRPTVSKVKNGAASPTKKKLVAKAKAQAPRGAAAPGAGQGLNAKGASAKANGS |
Parental | KVVPAHLSRKTEA |
KVVPAHLSRKTEA | |
Retrocopy | KVVPAHLSRKTEA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .00 RPM | 0 .00 RPM |
SRP051959_heart | 0 .00 RPM | 0 .00 RPM |
SRP051959_kidney | 0 .00 RPM | 0 .00 RPM |
SRP051959_liver | 0 .00 RPM | 0 .00 RPM |
SRP051959_lung | 0 .00 RPM | 0 .00 RPM |
SRP051959_lymph_node | 0 .02 RPM | 0 .02 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 0 .00 RPM |
SRP051959_spleen | 0 .00 RPM | 0 .02 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000017209 | 2 retrocopies |
retro_cjac_3976, retro_cjac_981 ,
|
Felis catus | ENSFCAG00000000094 | 2 retrocopies | |
Homo sapiens | ENSG00000178804 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000000735 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000025226 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000029379 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000010371 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000013414 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000015380 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000007110 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000011276 | 1 retrocopy |