RetrogeneDB ID: | retro_cpor_1107 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_46:12821179..12822122(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | WDR12 | ||
Ensembl ID: | ENSCPOG00000008824 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 74.61 % |
Parental protein coverage: | 74.7 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 2 |
Parental | MAQLQTRFFTDNKKYAVDDVPFSIPASSEIADLSNIINKLLEAKNEFHKYVEFDFLIKGQFLRMPLAKHM |
.AQLQT.F.TD.KK..VDDVPF.IP.SSEIADLSN.INKLLEAKN.FHKYV...FLI.GQF..MPLAKHM | |
Retrocopy | LAQLQTCFLTDSKKHGVDDVPFPIPDSSEIADLSNTINKLLEAKNKFHKYVALHFLINGQFS*MPLAKHM |
Parental | EVENISSEEVVELEYVEKYTAPQPEQCMFHDDWVSAV-KG-AEEWILTGSYDKTSRIWSLEGTSIMTIVG |
EVENIS..EVV.LEYVEK.TA.Q.EQCMFHD.W.S.V.KG.....ILTGS.DKTS.I.S.EGT.IM..V. | |
Retrocopy | EVENISL-EVVKLEYVEKCTAAQSEQCMFHDNWISSVSKG<SKQSILTGSHDKTSPI*SFEGT*IMINVE |
Parental | HTDVVKDVAWVKKDSLSCLL-LSASMDQTILLWEWSVERNKVKALHCCRGHAGSVDSIAVDSSGTKFCSG |
HT.V..D.A......L.CLL..S.SMDQT.LLWEWSVERNK.KA.HCC.GH.GS.DSIAV..SG.KF..G | |
Retrocopy | HTYVLEDIA-CXXXXLRCLL<MSPSMDQTFLLWEWSVERNKIKAVHCCSGHVGSMDSIAVENSGIKFFRG |
Parental | SWDKMLKIWSAVPTDEEDEMEESTNRPRKKQKTEQLGLTRTPIVTLSGHTEAISSVLWSDAEEICSASWD |
SWDKMLKI.SAVPTDEED.MEES.N..RKKQKTE.LGLTR.P.VTLS.HTEAISSVLW.DAEEICSASWD | |
Retrocopy | SWDKMLKI*SAVPTDEEDKMEESRN**RKKQKTEYLGLTRAPMVTLSDHTEAISSVLWADAEEICSASWD |
Parental | HTIRVWDVESGSLKSTLTGNKVFNCISYSPLCKRLASGS |
HTIR.WDVESG.LKSTLTGNK.FNCISYSPLC..L..GS | |
Retrocopy | HTIRMWDVESGCLKSTLTGNKMFNCISYSPLCIHLTTGS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 18 .29 RPM |
SRP017611_kidney | 0 .00 RPM | 16 .85 RPM |
SRP017611_liver | 0 .00 RPM | 11 .67 RPM |
SRP040447_lung | 0 .00 RPM | 13 .64 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 11 .21 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000012519 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000013851 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000005171 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000008824 | 1 retrocopy |
retro_cpor_1107 ,
|
Homo sapiens | ENSG00000138442 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000026073 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000011955 | 1 retrocopy | |
Mus musculus | ENSMUSG00000026019 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000007018 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000013089 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000012823 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000001231 | 1 retrocopy |