RetrogeneDB ID: | retro_hsap_1615 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 15:101185637..101186860(-) | ||
Located in intron of: | ENSG00000183475 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000259381 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | WDR12 | ||
Ensembl ID: | ENSG00000138442 | ||
Aliases: | None | ||
Description: | WD repeat domain 12 [Source:HGNC Symbol;Acc:14098] |
Percent Identity: | 79.43 % |
Parental protein coverage: | 98.11 % |
Number of stop codons detected: | 8 |
Number of frameshifts detected | 3 |
Parental | MAQLQTRFYTDNKKYAVDDVPFSIPAASEIADLSNIINKLLKDKNEFHKHVEFDFLIKGQFLRMPLDKHM |
MAQLQT.FYTD.KK.A..DV.FSIPA.S...DLSNIIN.LLK..NEFHK.VEFDFLIKGQFL.MPL.KHM | |
Retrocopy | MAQLQTSFYTDHKK*AINDVAFSIPAVS*SVDLSNIIN*LLKGRNEFHKYVEFDFLIKGQFL*MPLVKHM |
Parental | EMENISSEEVVEIEYVEKYTAPQPEQCMFHDDWISSIKGAEEWILTGSYDKTSRIWSLEGKSIMTIVGHT |
E.EN.S..EVVE.EY.EKYTAPQPE.....D.W.SSI.G.E.WILTGSYD.TSRIWSLEGKS..TIVGH. | |
Retrocopy | ERENTSLKEVVEREYAEKYTAPQPE*SVL-DEWTSSIQGTEVWILTGSYDETSRIWSLEGKSTLTIVGHM |
Parental | DVVK-DVAWVKKDSLSC-LLLSASMDQTILLWEWNVERNKVKALHCCRGHAGSVDSIAVDGSGTKFCSGS |
D.V..DVAWV.KDSL.C.LLLS.SMDQTILLWEWNV.RNKVK.L.CC.....SVDS.A.D.SGTKFCSGS | |
Retrocopy | DIVN>DVAWVTKDSL-C<LLLSGSMDQTILLWEWNVQRNKVKTL-CC---CPSVDSTAIDSSGTKFCSGS |
Parental | WDKMLKIWSTVPTDEEDEMEESTNRPRKKQKTEQLGLTRTPIVTLSGHMEAVSSVLWSDAEEICSASWDH |
.DKML.IWSTVPT.EEDEMEESTN.PRKKQKTEQLGLTRTPIVT.SGH.EA.SSVLWSDAEEICS.SWDH | |
Retrocopy | *DKMLRIWSTVPT-EEDEMEESTN*PRKKQKTEQLGLTRTPIVTFSGHKEAISSVLWSDAEEICSVSWDH |
Parental | TIRVWDVESGSLKSTL-TGNKVFNCISYSPLCKRLASGSTDRHIRLWDPRTKDGSLVSLSLTSHTGWVTS |
.I.VWDV..G.LKSTL.TGNKVFNCISYSPLCK.LASGSTDRHIRLWDP.TKDGS.V..SLTSHTGW.TS | |
Retrocopy | EISVWDVAFGNLKSTL<TGNKVFNCISYSPLCKCLASGSTDRHIRLWDPQTKDGSFVLPSLTSHTGWETS |
Parental | VKWSPTHEQQLISGSLDNIVKLWDTRSCKAPLYDLAAHEDKVLSVDWTDTGLLLSGGADNKLYSYRYS |
VK.SPTHE.Q.ISGSL.N.VKLWD.RSCKAPLYD.AAHE.KVL..D.TDTGLL.SGGADNKLYSYRYS | |
Retrocopy | VKRSPTHEPQQISGSLYNTVKLWDSRSCKAPLYDVAAHEEKVLRAD*TDTGLLPSGGADNKLYSYRYS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .22 RPM | 11 .91 RPM |
bodymap2_adrenal | 0 .18 RPM | 22 .62 RPM |
bodymap2_brain | 0 .40 RPM | 17 .60 RPM |
bodymap2_breast | 0 .12 RPM | 14 .90 RPM |
bodymap2_colon | 0 .00 RPM | 15 .82 RPM |
bodymap2_heart | 0 .02 RPM | 10 .84 RPM |
bodymap2_kidney | 0 .31 RPM | 26 .86 RPM |
bodymap2_liver | 0 .00 RPM | 10 .08 RPM |
bodymap2_lung | 0 .25 RPM | 6 .82 RPM |
bodymap2_lymph_node | 0 .73 RPM | 14 .56 RPM |
bodymap2_ovary | 0 .00 RPM | 22 .01 RPM |
bodymap2_prostate | 0 .33 RPM | 16 .80 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 15 .41 RPM |
bodymap2_testis | 0 .09 RPM | 37 .10 RPM |
bodymap2_thyroid | 0 .30 RPM | 21 .32 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 10 .02 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_1083 |
Gorilla gorilla | retro_ggor_1222 |
Pongo abelii | retro_pabe_1327 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000012519 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000013851 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000005171 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000008824 | 1 retrocopy | |
Homo sapiens | ENSG00000138442 | 1 retrocopy |
retro_hsap_1615 ,
|
Gorilla gorilla | ENSGGOG00000026073 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000011955 | 1 retrocopy | |
Mus musculus | ENSMUSG00000026019 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000007018 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000013089 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000012823 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000001231 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .13 RPM |
CEU_NA11843 | 0 .09 RPM |
CEU_NA11930 | 0 .13 RPM |
CEU_NA12004 | 0 .15 RPM |
CEU_NA12400 | 0 .25 RPM |
CEU_NA12751 | 0 .17 RPM |
CEU_NA12760 | 0 .09 RPM |
CEU_NA12827 | 0 .14 RPM |
CEU_NA12872 | 0 .19 RPM |
CEU_NA12873 | 0 .19 RPM |
FIN_HG00183 | 0 .22 RPM |
FIN_HG00277 | 0 .15 RPM |
FIN_HG00315 | 0 .03 RPM |
FIN_HG00321 | 0 .15 RPM |
FIN_HG00328 | 0 .05 RPM |
FIN_HG00338 | 0 .09 RPM |
FIN_HG00349 | 0 .03 RPM |
FIN_HG00375 | 0 .15 RPM |
FIN_HG00377 | 0 .05 RPM |
FIN_HG00378 | 0 .04 RPM |
GBR_HG00099 | 0 .09 RPM |
GBR_HG00111 | 0 .06 RPM |
GBR_HG00114 | 0 .08 RPM |
GBR_HG00119 | 0 .22 RPM |
GBR_HG00131 | 0 .43 RPM |
GBR_HG00133 | 0 .07 RPM |
GBR_HG00134 | 0 .24 RPM |
GBR_HG00137 | 0 .03 RPM |
GBR_HG00142 | 0 .25 RPM |
GBR_HG00143 | 0 .06 RPM |
TSI_NA20512 | 0 .08 RPM |
TSI_NA20513 | 0 .15 RPM |
TSI_NA20518 | 0 .03 RPM |
TSI_NA20532 | 0 .34 RPM |
TSI_NA20538 | 0 .37 RPM |
TSI_NA20756 | 0 .06 RPM |
TSI_NA20765 | 0 .17 RPM |
TSI_NA20771 | 0 .06 RPM |
TSI_NA20786 | 0 .05 RPM |
TSI_NA20798 | 0 .16 RPM |
YRI_NA18870 | 0 .20 RPM |
YRI_NA18907 | 0 .24 RPM |
YRI_NA18916 | 0 .06 RPM |
YRI_NA19093 | 0 .08 RPM |
YRI_NA19099 | 0 .08 RPM |
YRI_NA19114 | 0 .10 RPM |
YRI_NA19118 | 0 .08 RPM |
YRI_NA19213 | 0 .22 RPM |
YRI_NA19214 | 0 .10 RPM |
YRI_NA19223 | 0 .16 RPM |