RetrogeneDB ID: | retro_cpor_1122 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_48:9150462..9150756(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCPOG00000006368 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 68.37 % |
Parental protein coverage: | 52.97 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | RRVSVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPK |
R.VSV....LVKE.AELEANL....K.HFPDPNK..CFQ.TVTPDEG.YQGGKFQ.E.EV...YNMVP.K | |
Retrocopy | RQVSVTH*QLVKEGAELEANLLYKGKAHFPDPNKFLCFQPTVTPDEGAYQGGKFQSEAEVSEVYNMVPLK |
Parental | VKCLTKIWHPNITETGEICLSLLREHSI |
V.CLT.IWH....ETGE..LSLLRE.S. | |
Retrocopy | VSCLTGIWHLHVPETGETRLSLLREQSM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 17 .20 RPM |
SRP017611_kidney | 0 .00 RPM | 26 .59 RPM |
SRP017611_liver | 0 .00 RPM | 42 .96 RPM |
SRP040447_lung | 0 .00 RPM | 30 .49 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 43 .45 RPM |