Parental gene:

ENSCJAG00000000476

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:6:154478307..154559013(+)


>ENSCJAG00000000476
ATGCTAACGTTAGCAAGCAAACTGAAGCGTGACGATGGTCTCAAAGGGTCCCGGACGGCAGCCTCAGCGTCGGACTCTAC
TCGGAGGGTTTCTGTGAGAGACAAATTGCTTGTTAAAGAGGTTGCAGAACTGGAAGCTAATTTACCTTGTACATGTAAAG
TGCATTTTCCTGATCCAAACAAGCTTCATTGTTTTCAGCTAACAGTAACCCCAGATGAGGGTTACTACCAGGGTGGAAAA
TTTCAGTTTGAAACTGAAGTTCCTGATGCGTACAACATGGTGCCTCCCAAAGTGAAATGCCTGACCAAGATCTGGCACCC
CAACATCACAGAGACAGGGGAAATATGTCTGAGTTTACTGAGAGAACATTCTATTGACGGCACTGGCTGGGCTCCCACGA
GAACATTAAAGGATGTTGTTTGGGGATTAAACTCTTTGTTTACTGATCTTTTGAATTTTGATGACCCACTGAATATTGAA
GCTGCAGAACATCATTTGCGGGACAAGGAGGACTTCCGGAATAAAGTGGACGACTACATCAAGCGTTATGCCAGATGA

Library Parental gene expression (RPM)
SRP051959_spleen 16 .91 RPM
SRP051959_skeletal_muscle 12 .69 RPM
SRP051959_lymph_node 10 .27 RPM
SRP051959_lung 12 .93 RPM
SRP051959_liver 13 .19 RPM
SRP051959_kidney 15 .97 RPM
SRP051959_heart 11 .68 RPM
SRP051959_colon 10 .67 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000008551 ortholog_one2one 1 retrogene
retro_amel_572,
Bos taurus ENSBTAG00000026114 ortholog_one2one 2 retrogenes
retro_btau_1698, retro_btau_948,
Canis familiaris ENSCAFG00000012363 ortholog_one2one 1 retrogene
retro_cfam_1275,
Cavia porcellus ENSCPOG00000006368 ortholog_one2one 1 retrogene
retro_cpor_1122,
Dasypus novemcinctus ENSDNOG00000000506 ortholog_one2one 2 retrogenes
retro_dnov_1301, retro_dnov_132,
Equus caballus ENSECAG00000011687 ortholog_one2one 1 retrogene
retro_ecab_158,
Echinops telfairi ENSETEG00000009230 ortholog_one2one 1 retrogene
retro_etel_1534,
Homo sapiens ENSG00000184182 ortholog_one2many 2 retrogenes
retro_hsap_2439, retro_hsap_2773,
Gorilla gorilla ENSGGOG00000010709 ortholog_one2one 3 retrogenes
retro_ggor_1518, retro_ggor_1519, retro_ggor_1930,
Microcebus murinus ENSMICG00000012075 ortholog_one2one 5 retrogenes
retro_mmur_1014, retro_mmur_114, retro_mmur_1365, retro_mmur_584, retro_mmur_815,
Myotis lucifugus ENSMLUG00000001286 ortholog_one2one 5 retrogenes
retro_mluc_1237, retro_mluc_1674, retro_mluc_1747, retro_mluc_1789, retro_mluc_2627,
Macaca mulatta ENSMMUG00000018482 ortholog_one2many 4 retrogenes
retro_mmul_1450, retro_mmul_1585, retro_mmul_254, retro_mmul_628,
Mustela putorius furo ENSMPUG00000000101 ortholog_one2one 1 retrogene
retro_mputfur_782,
Mus musculus ENSMUSG00000034343 ortholog_one2many 3 retrogenes
retro_mmus_2161, retro_mmus_255, retro_mmus_845,
Nomascus leucogenys ENSNLEG00000011152 ortholog_one2one 2 retrogenes
retro_nleu_1340, retro_nleu_677,
Otolemur garnettii ENSOGAG00000005308 ortholog_one2one 7 retrogenes
retro_ogar_1109, retro_ogar_1995, retro_ogar_2491, retro_ogar_2551, retro_ogar_2715, retro_ogar_639, retro_ogar_761,
Pongo abelii ENSPPYG00000013315 ortholog_one2one 3 retrogenes
retro_pabe_1395, retro_pabe_1785, retro_pabe_2242,
Pan troglodytes ENSPTRG00000013081 ortholog_one2one 2 retrogenes
retro_ptro_1410, retro_ptro_1876,
Rattus norvegicus ENSRNOG00000019953 ortholog_one2one 1 retrogene
retro_rnor_2696,
Sus scrofa ENSSSCG00000027723 ortholog_one2one 3 retrogenes
retro_sscr_291, retro_sscr_423, retro_sscr_542,
Tarsius syrichta ENSTSYG00000011510 ortholog_one2one 3 retrogenes
retro_tsyr_1718, retro_tsyr_1944, retro_tsyr_2133,
Tursiops truncatus ENSTTRG00000011528 ortholog_one2one 2 retrogenes
retro_ttru_1297, retro_ttru_1455,
Vicugna pacos ENSVPAG00000010485 ortholog_one2one 1 retrogene
retro_vpac_361,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2378 94.59 100.00
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2. retro_cjac_2980 86.81 97.84
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3. retro_cjac_3219 88.18 59.46
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Download FASTA sequences of all ENSCJAG00000000476 retrocopies