RetrogeneDB ID: | retro_cpor_1214 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_57:4569545..4570093(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | VRK1 | ||
Ensembl ID: | ENSCPOG00000001772 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 50.54 % |
Parental protein coverage: | 50.84 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | YWGSGLHDKNGNSYRFMIIDRFGSDLQKIYEANAKRFSRKTVLQLSLRILDILEYIHEHEYVHGDIKASN |
Y..SGL..KN........ID.F...L..IYE.N.KRF.RK..L.LSL.ILD..E.IH..E.VH.DIK.SN | |
Retrocopy | YLRSGLCNKNRK*L*SRKIDHFQRHLKQIYEVNTKRFFRKLSLKLSLNILDVVEHIHKQEDVHADIKTSN |
Parental | LLLSYKNPDQVYLVDYGLAYRYCPEGVHREYKEDPKRCHDGTIEFTSIDAHHGVAPSR--RGDLEIL-GY |
L.LSYKN..QV...DYGL...Y.....H..YKED.KR......EF..ID.H.G....R....DLEIL.GY | |
Retrocopy | LRLSYKNHAQVHEIDYGLH*QYSSDKIHKDYKEDIKRYLHDANEFINIDIHNGIILPR*KYSDLEIL<GY |
Parental | CMIQWLSGHLPWEDNLKDPNYVRDSKIRYRDNIASLMEKCFPEK |
CM.QW.S.H..W.DNLKD.N..R..KIRY....A.L..K....K | |
Retrocopy | CMMQWHSVHRFWVDNLKDQNCARECKIRYQHSTAILIKKYYLKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 9 .78 RPM |
SRP017611_kidney | 0 .00 RPM | 37 .90 RPM |
SRP017611_liver | 0 .00 RPM | 5 .31 RPM |
SRP040447_lung | 0 .00 RPM | 14 .48 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 1 .84 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000001772 | 1 retrocopy |
retro_cpor_1214 ,
|
Danio rerio | ENSDARG00000018006 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000012543 | 1 retrocopy | |
Sorex araneus | ENSSARG00000009110 | 2 retrocopies |