RetrogeneDB ID: | retro_cpor_1232 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_59:10918771..10919282(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | AKIRIN1 | ||
Ensembl ID: | ENSCPOG00000015419 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 51.15 % |
Parental protein coverage: | 88.48 % |
Number of stop codons detected: | 7 |
Number of frameshifts detected | 2 |
Parental | GATLKRPMEFEAALLSPGSPKRR-RCAPLPG-PTPGLRPPDAEP-PPLQTQTLPPTLQQPAPPGSERRLP |
G..L..PMEF.A.LLS..SPK....CAPLPG.P..G.R..D....PPLQ.Q....T.QQ.A.P..E..LP | |
Retrocopy | GVML*WPMEFKAFLLSLSSPKQ**CCAPLPG<PPLGFRLLDTKLLPPLQMQIHWTTPQQSAIPNIEQCLP |
Parental | T-PEQIFQNIK-QEYSRYQRWRHLEVVLNQSEACTSESQPHSSALTAPSSPGSSWMKKDQPSFTLRQVGI |
T.PE..F...K....S..Q.WR.LEVVL..SE...SESQP.S....A.....SS..KKD.P.FT.....I | |
Retrocopy | T<PEAKFSEHKARKFSCHQWWRNLEVVLSLSEVHISESQPYSLTCMARNCLVSS*IKKDLPRFTH*EAEI |
Parental | ICERLLKDYEDKIREEYEQILNTKLAEQYESFVK |
I..RLLKDY...I.E.Y...L.TKLAE.YESF.K | |
Retrocopy | IYKRLLKDYAYRI*EKY-K*LHTKLAEEYESFMK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 14 .21 RPM |
SRP017611_kidney | 0 .00 RPM | 12 .56 RPM |
SRP017611_liver | 0 .00 RPM | 8 .97 RPM |
SRP040447_lung | 0 .00 RPM | 16 .29 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 7 .09 RPM |