Parental gene:

AKIRIN1, ENSCJAG00000002309

Aliases:None
Description:akirin 1 [Source:HGNC Symbol;Acc:25744]
Organism:Marmoset (Callithrix jacchus)
Coordinates:7:73419911..73431685(+)


>ENSCJAG00000002309
ATGGCGTGTGGGGCGACGCTGAAGCGGCCCATGGAGTTCGAGGCAGCGCTGCTGAGCCCCGGCTCCCCGAAGCGGCGGCG
CTGCGCCCCTCTGCCAGGCCCCACTCCGGGCCTCAGGCCCCCGGACGCCGAGCCGCCGCCGCCGCCGTTTCAGACGCAGA
CCCCACCGCCGAGTCTGCAGCAGCCCGCCCCGCCCGGCAGCGAGCGGCGCCTTCCAACTCCGGAGCAAATTTTTCAGAAC
ATAAAACAAGAATATAGTCGTTACCAGAGGTGGAGACATTTAGAAGTTGTTCTTAATCAGAGTGAAGCTTGTGCCTCAGA
AAGTCAACCTCACTCCTCAGCACTCACAGCACCTAGCTCTCCAGGTTCGTCATGGATGAAGAAGGACCAGCCCACCTTTA
CCCTCCGACAAGTTGGAATAATATGTGAGCGTCTCTTAAAAGACTATGAAGATAAGATTCGGGAGGAATATGAGCAAATC
CTCAATACCAAACTAGCAGAACAATATGAATCTTTTGTGAAATTCACACATGATCAGATTATGCGACGGTATGGGACAAG
GCCAACAAGCTATGTGTCCTGA

Library Parental gene expression (RPM)
SRP051959_spleen 17 .94 RPM
SRP051959_skeletal_muscle 10 .26 RPM
SRP051959_lymph_node 18 .86 RPM
SRP051959_lung 17 .03 RPM
SRP051959_liver 11 .70 RPM
SRP051959_kidney 14 .89 RPM
SRP051959_heart 9 .88 RPM
SRP051959_colon 12 .80 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000004715 ortholog_one2one 1 retrogene
retro_btau_853,
Canis familiaris ENSCAFG00000003186 ortholog_one2one 4 retrogenes
retro_cfam_1099, retro_cfam_1915, retro_cfam_2086, retro_cfam_810,
Choloepus hoffmanni ENSCHOG00000003010 ortholog_one2one 3 retrogenes
retro_chof_1529, retro_chof_624, retro_chof_672,
Callithrix jacchus ENSCJAG00000000769 within_species_paralog 1 retrogene
retro_cjac_2231,
Cavia porcellus ENSCPOG00000015419 ortholog_one2one 1 retrogene
retro_cpor_1232,
Dasypus novemcinctus ENSDNOG00000000332 ortholog_one2one 3 retrogenes
retro_dnov_1265, retro_dnov_1828, retro_dnov_509,
Dipodomys ordii ENSDORG00000009324 ortholog_one2one 2 retrogenes
retro_dord_121, retro_dord_436,
Equus caballus ENSECAG00000012589 ortholog_one2many 1 retrogene
retro_ecab_108,
Erinaceus europaeus ENSEEUG00000004136 ortholog_one2one 3 retrogenes
retro_eeur_257, retro_eeur_422, retro_eeur_703,
Echinops telfairi ENSETEG00000006751 ortholog_one2one 1 retrogene
retro_etel_336,
Homo sapiens ENSG00000174574 ortholog_one2one 1 retrogene
retro_hsap_4692,
Gorilla gorilla ENSGGOG00000006053 ortholog_one2one 1 retrogene
retro_ggor_2920,
Macropus eugenii ENSMEUG00000011154 ortholog_one2one 1 retrogene
retro_meug_2030,
Monodelphis domestica ENSMODG00000017703 ortholog_one2one 1 retrogene
retro_mdom_1466,
Mustela putorius furo ENSMPUG00000014440 ortholog_one2one 1 retrogene
retro_mputfur_1389,
Mus musculus ENSMUSG00000023075 ortholog_one2one 1 retrogene
retro_mmus_733,
Nomascus leucogenys ENSNLEG00000011849 ortholog_one2one 1 retrogene
retro_nleu_2363,
Oryctolagus cuniculus ENSOCUG00000005500 ortholog_one2many 1 retrogene
retro_ocun_140,
Otolemur garnettii ENSOGAG00000007962 ortholog_one2one 2 retrogenes
retro_ogar_445, retro_ogar_674,
Pongo abelii ENSPPYG00000001511 ortholog_one2one 2 retrogenes
retro_pabe_3137, retro_pabe_3646,
Sarcophilus harrisii ENSSHAG00000017458 ortholog_one2one 1 retrogene
retro_shar_577,
Ictidomys tridecemlineatus ENSSTOG00000023219 ortholog_one2one 1 retrogene
retro_itri_427,
Tarsius syrichta ENSTSYG00000003345 ortholog_one2one 1 retrogene
retro_tsyr_139,
Tursiops truncatus ENSTTRG00000002293 ortholog_one2one 2 retrogenes
retro_ttru_1848, retro_ttru_513,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1460 87.60 62.69
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2. retro_cjac_3694 93.43 100.00
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3. retro_cjac_4071 77.85 81.35
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Download FASTA sequences of all ENSCJAG00000002309 retrocopies