RetrogeneDB ID: | retro_cpor_244 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_11:738638..738939(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SH3BGRL | ||
Ensembl ID: | ENSCPOG00000012267 | ||
Aliases: | None | ||
Description: | SH3 domain-binding glutamic acid-rich-like protein [Source:UniProtKB/TrEMBL;Acc:H0VL18] |
Percent Identity: | 80.58 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MVIRVYIASSSGSTAIKKKQQDVLG-FLEANKIGFEEKDIAANEENRKWMRENVPENSRPATGYPLPPQI |
MVI.VYIASSSGS..IKKKQQDVLG.FLEANKIGFEEKDIAANEE.RKWMRENVPEN..PATG.PL.PQ. | |
Retrocopy | MVICVYIASSSGSMVIKKKQQDVLG<FLEANKIGFEEKDIAANEEDRKWMRENVPENRQPATGNPLEPQN |
Parental | FNESQYRGDYDA-FEARENNAVYA-FLGLKAPP |
F.ESQY.GDYD..FEA...N.VYA.FLGLK.PP | |
Retrocopy | FTESQYHGDYDTFFEA*KTNTVYA<FLGLKTPP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .06 RPM | 12 .88 RPM |
SRP017611_kidney | 0 .00 RPM | 33 .50 RPM |
SRP017611_liver | 0 .00 RPM | 10 .19 RPM |
SRP040447_lung | 0 .00 RPM | 40 .71 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 5 .55 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000004130 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000003568 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000012267 | 3 retrocopies |
retro_cpor_1172, retro_cpor_244 , retro_cpor_844,
|
Equus caballus | ENSECAG00000012612 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000013216 | 1 retrocopy |