RetrogeneDB ID: | retro_cpor_67 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_33:1622468..1623179(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCPOG00000025612 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCPOG00000005260 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 98.74 % |
Parental protein coverage: | 97.94 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSFLKSFPPPGSTEGLRHQQPDTEAVLNGNGLGTGTLYISESRLSWLDGSGLGFSLEYPTISLHAVSRDL |
MSFLKSFPPPGSTEGLRHQQPDTEAVLNGNGLGT.TLYISESRLSWLDGSGLGFSLEYPTISLHAVSRDL | |
Retrocopy | MSFLKSFPPPGSTEGLRHQQPDTEAVLNGNGLGTATLYISESRLSWLDGSGLGFSLEYPTISLHAVSRDL |
Parental | NAYPREHLYVMVNSKFGEEIKDSLDEEEEDSDDDVEPITEFRFVPTDKSALEAMFTAMCECQALHPDPED |
NAYPREHLYVMVNSKFGEEIKDSLDEEEEDSDDDVEPITEFRFVPTDKSALEAMFTAMCECQALHPDPED | |
Retrocopy | NAYPREHLYVMVNSKFGEEIKDSLDEEEEDSDDDVEPITEFRFVPTDKSALEAMFTAMCECQALHPDPED |
Parental | EDSDDYDGEEYDVEAHEQGQGDIPTFYTYEEGLSHLTAEGQATLERLEGMLSQSVSSQYNMAGVRTEDSV |
EDSDDYDGEEYDVEAHEQGQGDIPTFYTYEEGLSHLTAEGQATLERLEGMLSQSVSSQYNMAGVRTEDSV | |
Retrocopy | EDSDDYDGEEYDVEAHEQGQGDIPTFYTYEEGLSHLTAEGQATLERLEGMLSQSVSSQYNMAGVRTEDSV |
Parental | RDYEGSDGMEVDTAPTVAGQFEDADVDH |
RDYE..DGMEVDTAPTVAGQFEDADVDH | |
Retrocopy | RDYE--DGMEVDTAPTVAGQFEDADVDH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 3 .57 RPM | 4 .72 RPM |
SRP017611_kidney | 3 .04 RPM | 4 .08 RPM |
SRP017611_liver | 1 .96 RPM | 2 .74 RPM |
SRP040447_lung | 2 .90 RPM | 7 .21 RPM |
SRP040447_skeletal_muscle | 2 .86 RPM | 7 .09 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000019930 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000004900 | 6 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000007254 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000014927 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000005260 | 1 retrocopy |
retro_cpor_67 ,
|
Dasypus novemcinctus | ENSDNOG00000008188 | 1 retrocopy | |
Felis catus | ENSFCAG00000026321 | 1 retrocopy | |
Homo sapiens | ENSG00000074201 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000003091 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000005935 | 4 retrocopies | |
Myotis lucifugus | ENSMLUG00000024623 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000015944 | 1 retrocopy | |
Mus musculus | ENSMUSG00000025439 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000016699 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000024393 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000003712 | 1 retrocopy | |
Sorex araneus | ENSSARG00000009460 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000027980 | 3 retrocopies | |
Tupaia belangeri | ENSTBEG00000001316 | 1 retrocopy |