RetrogeneDB ID: | retro_cpor_763 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_27:6481429..6481854(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TIPRL | ||
Ensembl ID: | ENSCPOG00000009945 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 83.92 % |
Parental protein coverage: | 51.84 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | ADVEKLADELHMPSLPEMMFGDNVLRIQHGSGFG-IEFNATDAL-KCVNNYQGMLKVACAEEWQESRTEG |
A...KL.DEL.....PEMMFGDNVLRIQHGSGF..IEF.ATDAL.KCVNNYQGMLKVACAEEWQE.R..G | |
Retrocopy | AHIVKLVDELQYAISPEMMFGDNVLRIQHGSGFE>IEFSATDAL>KCVNNYQGMLKVACAEEWQERRM*G |
Parental | EHSKEVVKPYDWTYTTDYKGTLLGDSLKLKVVPTTDHIDTEKLKAREQIKFFEEVLLFEDELHDHGVSSL |
EHSK.VVKP.DWTY.TDYKG.LLGDSLKLKV.PTTDHIDTEKLKAREQI.FFEEVLLFEDELHDHGVSSL | |
Retrocopy | EHSKDVVKPCDWTYITDYKGALLGDSLKLKVLPTTDHIDTEKLKAREQITFFEEVLLFEDELHDHGVSSL |
Parental | SVK |
.VK | |
Retrocopy | HVK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 25 .25 RPM |
SRP017611_kidney | 0 .00 RPM | 18 .95 RPM |
SRP017611_liver | 0 .00 RPM | 14 .28 RPM |
SRP040447_lung | 0 .00 RPM | 10 .64 RPM |
SRP040447_skeletal_muscle | 0 .05 RPM | 9 .96 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000008689 | 3 retrocopies | |
Cavia porcellus | ENSCPOG00000009945 | 1 retrocopy |
retro_cpor_763 ,
|
Echinops telfairi | ENSETEG00000005808 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000007808 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000011927 | 3 retrocopies | |
Monodelphis domestica | ENSMODG00000002880 | 1 retrocopy | |
Mus musculus | ENSMUSG00000040843 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000011313 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000005071 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000003048 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000018932 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000014921 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000017081 | 3 retrocopies |