RetrogeneDB ID: | retro_dnov_1681 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_2653:122630..123362(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | POLR3D | ||
Ensembl ID: | ENSDNOG00000013488 | ||
Aliases: | None | ||
Description: | polymerase (RNA) III (DNA directed) polypeptide D, 44kDa [Source:HGNC Symbol;Acc:1080] |
Percent Identity: | 64.45 % |
Parental protein coverage: | 62.81 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 6 |
Parental | RNAAGEPSAPRGPRPLLPGARGLIERRPAPPLTPGRLPSIRSRDLTLGGVKKKTFTPNIISRKIKEEPKE |
R...GE...P.GP.PLL.GA.GL.......PLT...LPSI.SRDL..GG.KKK.F..NI...KIKEEPKE | |
Retrocopy | RRHHGEAQPPGGPQPLLSGAWGL--EAASNPLTQCCLPSICSRDLIFGGIKKKIFILNISRWKIKEEPKE |
Parental | DMTVKKEKRERDRDRQREGHGRGRGRPEVIQSHSIFEQGPAEMMKKKG-NW-DKTVDMSDMGPSHIINIK |
..TVKKEK.ERDRD.Q.EGHG.G.G..E.IQSHSIFEQG.AE.MK.KG..W.DKTVD..DMGP...INI. | |
Retrocopy | YVTVKKEKCERDRDLQQEGHGWGQGHSEGIQSHSIFEQGQAELMKEKG<SW<DKTVDV*DMGPALTINIT |
Parental | KEKRETDEET-KQILRMLEKDDFIDDPGLRNDMRNMPVQLPLAYSGWLFK-EESEEPDVKPWPAGPKEED |
.E.RE.DEET..QIL..LEK..F..D.GLRND.RN.PVQLPLA.SG.L.K.EE.EEPD..PW.AGPK..D | |
Retrocopy | *EQREMDEET<QQILCILEKGEFVHDHGLRNDPRNLPVQLPLAHSGRLSK<EENEEPDGMPWWAGPK--D |
Parental | MEVDTPVTKVKEEPRDEEEEAKAKAPP-RAARKT-PGLPKEVSVAE |
.EVD.PV..VK.EP.DEEEEAK.KAPP.RAARKT...LP...SVA. | |
Retrocopy | LEVDVPVCEVKVEP*DEEEEAKEKAPP<RAARKT<LDLPTAISVAQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 17 .50 RPM |
SRP012922_cerebellum | 0 .00 RPM | 29 .83 RPM |
SRP012922_heart | 0 .00 RPM | 9 .51 RPM |
SRP012922_kidney | 0 .00 RPM | 12 .32 RPM |
SRP012922_liver | 0 .00 RPM | 13 .00 RPM |
SRP012922_lung | 0 .00 RPM | 28 .41 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 17 .48 RPM |
SRP012922_spleen | 0 .00 RPM | 23 .12 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000013488 | 1 retrocopy |
retro_dnov_1681 ,
|
Equus caballus | ENSECAG00000025090 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000007632 | 2 retrocopies | |
Homo sapiens | ENSG00000168495 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000000465 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000002109 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000023226 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000009491 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000015502 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000018419 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000020056 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000012745 | 1 retrocopy |