RetrogeneDB ID: | retro_dnov_2336 | ||
Retrocopy location | Organism: | Armadillo (Dasypus novemcinctus) | |
| Coordinates: | scaffold_65444:7497..8033(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | DRAM2 | ||
| Ensembl ID: | ENSDNOG00000017009 | ||
| Aliases: | None | ||
| Description: | DNA-damage regulated autophagy modulator 2 [Source:HGNC Symbol;Acc:28769] |
Retrocopy-Parental alignment summary:
>retro_dnov_2336
ATGTGGTGGTTTCCACAAGCCCTCAGCTTCCTCCCTTCAGCCCTTTGATTTGGACAGCTGCTCCTTTTATCTTTTCATGC
ATTTCTGCAATAACTCTCCGCCGTGTTGACCCTGCTTTGCCTTATATCAGTGATACTGGTGCAGTAGCTCCAGAAAAATG
CTTGTTTGGGGCCATGTTAAATGTCGCTGCAGTTTTATGTGTTGCTACCATTTATGTTCGTTTCAAGCAAGTTCATGCTC
TGAATCCTGAAGAAAGTCGTATCATCAAATTAAACAAAGTTGGCCTTGTGCTTGAACTGCTGAGTTGCTTAGGACTTTCG
ATTGTGGCAAACTTCCAGAAAACCACCCTTTTTGCTACACATGTAAGTGGAGCTGTACTCACCTTTGGTCTGGGCTCATT
ATATATGTTTGTTCAAACCATCCTTTCCTACCAAAAGCAGCCCAAAATTCATGGCAAACAAGTCTTCTGGATCAGACTAC
TGGTGGTTATCTGGTGTGGAGTAAGTGCACCTAGCATGCTGATTTGCTCATCACTT
ORF - retro_dnov_2336 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 91.11 % |
| Parental protein coverage: | 67.29 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | MWWFQQGLSFLPSAL-VIWTAAAFILSYITAITLHHVDPALPYISDTGTVAPEKCLFGAMLNVAAVLCVA |
| MWWF.Q.LSFLPSAL..IWTAA.FI.S.I.AITL..VDPALPYISDTG.VAPEKCLFGAMLNVAAVLCVA | |
| Retrocopy | MWWFPQALSFLPSAL<LIWTAAPFIFSCISAITLRRVDPALPYISDTGAVAPEKCLFGAMLNVAAVLCVA |
| Parental | TIYVRYKQVHALNPEESRIIKLNKVGLVLGLLSCLGLSIVANFQKTTLFAAHVSGAVLTFGLGSLYMFVQ |
| TIYVR.KQVHALNPEESRIIKLNKVGLVL.LLSCLGLSIVANFQKTTLFA.HVSGAVLTFGLGSLYMFVQ | |
| Retrocopy | TIYVRFKQVHALNPEESRIIKLNKVGLVLELLSCLGLSIVANFQKTTLFATHVSGAVLTFGLGSLYMFVQ |
| Parental | TILSYQMQPKIHGKQVFWIRLLVVIWCGVSALSMLICSSL |
| TILSYQ.QPKIHGKQVFWIRLLVVIWCGVSA.SMLICSSL | |
| Retrocopy | TILSYQKQPKIHGKQVFWIRLLVVIWCGVSAPSMLICSSL |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP012922_ascending_colon | 1 .94 RPM | 32 .48 RPM |
| SRP012922_cerebellum | 1 .37 RPM | 28 .87 RPM |
| SRP012922_heart | 0 .46 RPM | 11 .60 RPM |
| SRP012922_kidney | 1 .10 RPM | 29 .02 RPM |
| SRP012922_liver | 1 .86 RPM | 27 .25 RPM |
| SRP012922_lung | 1 .07 RPM | 37 .11 RPM |
| SRP012922_quadricep_muscle | 1 .38 RPM | 24 .92 RPM |
| SRP012922_spleen | 3 .89 RPM | 91 .23 RPM |
Dasypus novemcinctus was not studied using ChIP-Seq data.
Dasypus novemcinctus was not studied using EST data.
Dasypus novemcinctus was not studied using FANTOM5 data.
retro_dnov_2336 was not experimentally validated.
Retrocopy orthology:
Dasypus novemcinctus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 5 parental genes, and 6 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Dasypus novemcinctus | ENSDNOG00000017009 | 1 retrocopy |
retro_dnov_2336 ,
|
| Loxodonta africana | ENSLAFG00000007736 | 1 retrocopy | |
| Myotis lucifugus | ENSMLUG00000005097 | 1 retrocopy | |
| Mustela putorius furo | ENSMPUG00000004232 | 1 retrocopy | |
| Pteropus vampyrus | ENSPVAG00000005429 | 2 retrocopies |