RetrogeneDB ID: retro_mluc_372

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429780:7331124..7331919(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000028901
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000005097
• Aliases: None
• Description: None

Sequence

>retro_mluc_372
TGGTTTCAGCAAGGCCTCAGTTTCCTGCCCTCAGCCCTTGTCATTTGGACGGCTGCTGCTTTCATATTTTCGTACATTAC
TGCCATCATCCTCCACCATGTGGACCCTGCGTTGCCTTATATCAGTGACACTGGTACCATCGCTCCAGAAAAGTGCCTGT
TTGGGGCAATGTTAAATTTCGCCGCAGTTTTATGCGTTGCTACCATTTATGTTCGTTATAAGCAAGTTCAGGCTCTGAAT
CCCGAAGGGAAATATATCTCCAAGTTAAACAAGGCTGACTTCGTACTTGGATTGCTGAGTTGTTTAGGACTTTCTTTTGT
GGCAAATTTCCAGAAAACAACCTTTTTTGCCGTGCATATATGTGGAGCTGTTCTCACCTTTGGTATGGGCTCATTGTATA
TGTTTGTACAGACCGCCCTTTCCTACCTAATGCAGCCCAAAATTCATGGCAAGCAAATCTTCTGGGTCAGACTACTGCTG
GTCATCTGGTGTGGAGTGAGCGCATTTAGCATGCTGACTTGCTCCTCACTCCTGTACAGTGGCCATTTTGGCTCAGATAT
AGTACAGAAACTCCACTGGAACCCCGAGGATAAAGGCTATGTGCTTCACATGATTACTACCGCAGCAGAATGGTCTATGT
CATTTTCCTCCTTTGGTTTTTTCCTGACTTATATCCGTGATTTTCAGAAAATTTCTTTGCGAGTGGAAACCAATTTACAT
GGATTAACCCTCTATGACACTGTTCCTTGTGCTATTAACCATGAGCAATCACACATACTTTCCAGAGATATATGA

Alignment

ORF - retro_mluc_372 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 98.11 %
• Parental protein coverage: 99.25 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  WFQQGLSFLPSALVIWTAAAFIFSYITAIILHHVDPALPYISDTGTIAPEKCLFGAMLNFAAVLCVATIY
          WFQQGLSFLPSALVIWTAAAFIFSYITAIILHHVDPALPYISDTGTIAPEKCLFGAMLNFAAVLCVATIY
Retrocopy WFQQGLSFLPSALVIWTAAAFIFSYITAIILHHVDPALPYISDTGTIAPEKCLFGAMLNFAAVLCVATIY

Parental  VRYKQVQALNPEGKYISKLNKAGFVLGLLSCLGLSFVANFQKTTFFAVHICGAVLTFGMGSLYMFVQTAL
          VRYKQVQALNPEGKYISKLNKA.FVLGLLSCLGLSFVANFQKTTFFAVHICGAVLTFGMGSLYMFVQTAL
Retrocopy VRYKQVQALNPEGKYISKLNKADFVLGLLSCLGLSFVANFQKTTFFAVHICGAVLTFGMGSLYMFVQTAL

Parental  SYLMQPKIHGKQIFWVRLLLVIWCGVSAFSMLTCSSLLYSGHFGSDIVQKLHWNPEDKGYVLHMITTAAE
          SYLMQPKIHGKQIFWVRLLLVIWCGVSAFSMLTCSSLLYSGHFGSDIVQKLHWNPEDKGYVLHMITTAAE
Retrocopy SYLMQPKIHGKQIFWVRLLLVIWCGVSAFSMLTCSSLLYSGHFGSDIVQKLHWNPEDKGYVLHMITTAAE

Parental  WSMSFSFFGFFLTYIRDFQKISLRVETNLHGLTLYDTVPCPINNEQSHLLSRDI
          WSMSFS.FGFFLTYIRDFQKISLRVETNLHGLTLYDTVPC.IN.EQSH.LSRDI
Retrocopy WSMSFSSFGFFLTYIRDFQKISLRVETNLHGLTLYDTVPCAINHEQSHILSRDI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_372 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000017009	1 retrocopy	retro_dnov_2336,
Loxodonta africana	ENSLAFG00000007736	1 retrocopy	retro_lafr_688,
Myotis lucifugus	ENSMLUG00000005097	1 retrocopy	retro_mluc_372 ,
Mustela putorius furo	ENSMPUG00000004232	1 retrocopy	retro_mputfur_446,
Pteropus vampyrus	ENSPVAG00000005429	2 retrocopies	retro_pvam_1424, retro_pvam_96,