RetrogeneDB ID: retro_mputfur_446

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896910.1:17914406..17914786(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: DRAM2
• Ensembl ID: ENSMPUG00000004232
• Aliases: None
• Description: DNA-damage regulated autophagy modulator 2 [Source:HGNC Symbol;Acc:28769]

Sequence

>retro_mputfur_446
GCTGACCCTGCTCTGCCTTATATCAGTGACACTGGTTCAGTAGCTCCAGAAAAATGCTTGTTTGGGGCAATGTTAAATAC
TGCCGCAGTTTTGTGCATTGCAACCATTTATGTTCATTACAAGCAAGTTCATGCCCTGAATCCTGAAGAGAGTCATATCA
TCAAATTAATTGAGGCTGGTCTTGTACTTGGCTTACTGAGCTGTTTTGGACTTTCTGTTGTGGCACACTTCCAGACAACA
GCCTTATTCCTGTACATGTATGTGGAGCTGTGCTCACCTTTCGTATTAGCTCGTTACACATGTTCGTTCAGACTATCCTT
TCCTACCAAATGCAGCTCAAAATTGGCGGCAAACAAGTCTTCTGGATCAGACGACTGGTG

Alignment

ORF - retro_mputfur_446 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 80.47 %
• Parental protein coverage: 54.27 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  SNTALMYPGDTGTVAPEKCLFGAMLNIAAVLCIATIYVRYKQVHALNPEESRIIKLNKAGLVLGLLSCFG
          ...AL.Y..DTG.VAPEKCLFGAMLN.AAVLCIATIYV.YKQVHALNPEES.IIKL..AGLVLGLLSCFG
Retrocopy ADPALPYISDTGSVAPEKCLFGAMLNTAAVLCIATIYVHYKQVHALNPEESHIIKLIEAGLVLGLLSCFG

Parental  LTVVANFQKTAFFI-VHVCGAVLTFGMGSLYMFVQTILSYQMQPKIHGKQVFWIRLLV
          L.VVA.FQ.TA.F..VHVCGAVLTF...SL.MFVQTILSYQMQ.KI.GKQVFWIR.LV
Retrocopy LSVVAHFQTTALFL<VHVCGAVLTFRISSLHMFVQTILSYQMQLKIGGKQVFWIRRLV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_446 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_446 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 5 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000017009	1 retrocopy	retro_dnov_2336,
Loxodonta africana	ENSLAFG00000007736	1 retrocopy	retro_lafr_688,
Myotis lucifugus	ENSMLUG00000005097	1 retrocopy	retro_mluc_372,
Mustela putorius furo	ENSMPUG00000004232	1 retrocopy	retro_mputfur_446 ,
Pteropus vampyrus	ENSPVAG00000005429	2 retrocopies	retro_pvam_1424, retro_pvam_96,