RetrogeneDB ID: | retro_dnov_2383 | ||
Retrocopy location | Organism: | Armadillo (Dasypus novemcinctus) | |
| Coordinates: | scaffold_6963:77933..78198(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | RNF7 | ||
| Ensembl ID: | ENSDNOG00000005961 | ||
| Aliases: | None | ||
| Description: | ring finger protein 7 [Source:HGNC Symbol;Acc:10070] |
Retrocopy-Parental alignment summary:
>retro_dnov_2383
GGGGGGGATAAAATGTTCTCCCTCAAAAGTGGAATGCCCGGCATGTGGAGCTGAGACATGGACTGTAATAAGTACGCTAT
CTGCAGGGCTCAGGTGATGGATGCCTGTCTTAGATAACAAGCTGAAAACGAAAAAAGAGGATTGTGCTGTTGTCTGGGTA
GAACGCAATCATTCCTTCCACAACTGCTGCAAGTCCCTGTGAGTAAAACAGAATAATCACTGCCCTCTCTGCCAGCAAGT
CTGGGTAGTCCAAAGAATCAGCAAA
ORF - retro_dnov_2383 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 71.11 % |
| Parental protein coverage: | 79.46 % |
| Number of stop codons detected: | 3 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | GADKMFSLKKWNAVAMRSRDVECDTCAICRVQVMDACLRCQAEN-KQEDCVVVWGECNHSFHNCCMSLWV |
| G.DKMFSLK......M.S.D..C...AICR.QVMDACLR.QAEN.K.EDC.VVW.E.NHSFHNCC.SL.V | |
| Retrocopy | GGDKMFSLKS-GMPGMWS*DMDCNKYAICRAQVMDACLR*QAEN>KKEDCAVVWVERNHSFHNCCKSL*V |
| Parental | KQNNRCPLCQQDWVVQRIGK |
| KQNN.CPLCQQ.WVVQRI.K | |
| Retrocopy | KQNNHCPLCQQVWVVQRISK |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP012922_ascending_colon | 0 .00 RPM | 13 .42 RPM |
| SRP012922_cerebellum | 0 .00 RPM | 14 .02 RPM |
| SRP012922_heart | 0 .00 RPM | 11 .37 RPM |
| SRP012922_kidney | 0 .00 RPM | 15 .06 RPM |
| SRP012922_liver | 0 .00 RPM | 8 .20 RPM |
| SRP012922_lung | 0 .00 RPM | 15 .43 RPM |
| SRP012922_quadricep_muscle | 0 .00 RPM | 26 .65 RPM |
| SRP012922_spleen | 0 .00 RPM | 13 .28 RPM |
Dasypus novemcinctus was not studied using ChIP-Seq data.
Dasypus novemcinctus was not studied using EST data.
Dasypus novemcinctus was not studied using FANTOM5 data.
retro_dnov_2383 was not experimentally validated.