RetrogeneDB ID: | retro_dnov_962 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_12761:10831..11253(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBE2W | ||
Ensembl ID: | ENSDNOG00000012909 | ||
Aliases: | None | ||
Description: | ubiquitin-conjugating enzyme E2W (putative) [Source:HGNC Symbol;Acc:25616] |
Percent Identity: | 79.17 % |
Parental protein coverage: | 99.31 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | KRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYP-FDSPQVMFT |
K.LQKELLAL.ND..PGMTLNEKSVQNSITQ.I..M.G.PGTLYEGE.FQLLFKFSS.YP.F..PQV.FT | |
Retrocopy | K*LQKELLALRNDTSPGMTLNEKSVQNSITQGILNMKGTPGTLYEGETFQLLFKFSSQYP<FGFPQVVFT |
Parental | GENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLSSCKEKRRPPDNSFYVRTCNKNPKKTKW |
GE...VH..VY.NGHICLSI.TEDWSP.LSV.S.CLS.ISMLSSCKEKR.PPDN.FYV.TCNKN.KKTKW | |
Retrocopy | GEITAVH--VYGNGHICLSIITEDWSPMLSV*SFCLSTISMLSSCKEKR*PPDNPFYV*TCNKNSKKTKW |
Parental | WYHD |
WYHD | |
Retrocopy | WYHD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 3 .50 RPM |
SRP012922_cerebellum | 1 .37 RPM | 1 .51 RPM |
SRP012922_heart | 0 .00 RPM | 0 .70 RPM |
SRP012922_kidney | 0 .00 RPM | 2 .46 RPM |
SRP012922_liver | 0 .00 RPM | 2 .94 RPM |
SRP012922_lung | 0 .00 RPM | 1 .83 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 0 .87 RPM |
SRP012922_spleen | 0 .00 RPM | 1 .83 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000005910 | 4 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000012909 | 2 retrocopies |
retro_dnov_1378, retro_dnov_962 ,
|
Erinaceus europaeus | ENSEEUG00000011886 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000027009 | 3 retrocopies | |
Sorex araneus | ENSSARG00000007886 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000011410 | 3 retrocopies | |
Vicugna pacos | ENSVPAG00000001527 | 2 retrocopies |