RetrogeneDB ID: | retro_chof_957 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_175596:3731..4141(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBE2W | ||
Ensembl ID: | ENSCHOG00000005910 | ||
Aliases: | None | ||
Description: | ubiquitin-conjugating enzyme E2W (putative) [Source:HGNC Symbol;Acc:25616] |
Percent Identity: | 78.26 % |
Parental protein coverage: | 99.26 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | KFQKELLVFQNEQFLAVALNEKSVQNSIA-WIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGE |
..QKELL..QN.....V.LNEKSVQNSI..WI.D.EG.PGTLYEGE.FQLLFK.SS.Y.FDSPQV.FT.E | |
Retrocopy | QLQKELLALQNDSPPGVTLNEKSVQNSITQWIIDTEGVPGTLYEGEIFQLLFKVSS*YAFDSPQVTFTSE |
Parental | NIPVHPHVYSN-GHICLSLLTEDWSPALSVQSV-LTIIRWLSSCKEKRRPPDNSFYVRTCNKNPKKTK |
NIPVHPHVYSN..HICLS.LTEDWSPALSVQSV.L.II..LSSCKEKR.PPDNSFYV.TCNKNPKKTK | |
Retrocopy | NIPVHPHVYSN<CHICLSILTEDWSPALSVQSVCLSIISMLSSCKEKRQPPDNSFYV*TCNKNPKKTK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000005054 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000005910 | 4 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000012909 | 2 retrocopies | |
Erinaceus europaeus | ENSEEUG00000011886 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000027009 | 3 retrocopies | |
Sorex araneus | ENSSARG00000007886 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000011410 | 3 retrocopies | |
Vicugna pacos | ENSVPAG00000001527 | 2 retrocopies |