RetrogeneDB ID: | retro_dord_418 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | scaffold_17480:13438..13837(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ebag9 | ||
Ensembl ID: | ENSDORG00000010177 | ||
Aliases: | None | ||
Description: | estrogen receptor-binding fragment-associated gene 9 [Source:MGI Symbol;Acc:MGI:1859920] |
Percent Identity: | 83.46 % |
Parental protein coverage: | 51.35 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAITQFRLFKVCTCLATVFSFLKRLICRSGRGRKLSGDQITLPTTVDYSSVPKQTDVEEWTSWDEDAPTS |
M.ITQF.L.KVCTCLATV.SFLKRL.CRSGRG..LSGDQI.LPTTVDYSS.PK..D.EEWTSWDEDAPTS | |
Retrocopy | MPITQFQLLKVCTCLATVLSFLKRLKCRSGRGKILSGDQIILPTTVDYSSAPKHIDMEEWTSWDEDAPTS |
Parental | VKIEGGNGNVASQQNALEQLEPDYFKDMTPTIRKTQKIVIKKREPLNFGIPDGSTGFSSRLAA |
VK.EGGNGNVASQQN.LEQLEP..FKDMTPTIRK.QKIVIKKREPLNFGI..GST.F.SRL.A | |
Retrocopy | VKTEGGNGNVASQQNTLEQLEPYSFKDMTPTIRKNQKIVIKKREPLNFGIANGSTCFFSRLTA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006190 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000007848 | 5 retrocopies | |
Cavia porcellus | ENSCPOG00000001059 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000010177 | 2 retrocopies |
retro_dord_418 , retro_dord_91,
|
Equus caballus | ENSECAG00000009719 | 2 retrocopies | |
Felis catus | ENSFCAG00000025490 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000014115 | 3 retrocopies | |
Monodelphis domestica | ENSMODG00000004795 | 2 retrocopies | |
Mus musculus | ENSMUSG00000022339 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000004220 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000006024 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000015326 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000001745 | 2 retrocopies |