Parental gene:

Ebag9, ENSMUSG00000022339

Aliases:Ebag9, AI835379, Rcas1
Description:estrogen receptor-binding fragment-associated gene 9 [Source:MGI Symbol;Acc:MGI:1859920]
Organism:Mouse (Mus musculus)
Coordinates:15:44619640..44641024(+)


>ENSMUSG00000022339
ATGGCCATCACTCAGTTTCGGTTATTTAAAGTTTGTACCTGCCTAGCAACAGTGTTCTCGTTCCTAAAGAGATTAATATG
CAGATCTGGCAGAGGAAGGAAATTAAGTGGAGATCAAATAACTTTGCCCACTACAGTTGATTATTCGTCTGTCCCTAAGC
AGACAGATGTGGAGGAGTGGACTTCCTGGGATGAAGATGCACCCACAAGTGTAAAGATCGAAGGAGGGAATGGGAATGTG
GCTACTCAGCAGAACTCTTTGGAACAACTGGAACCTGACTACTTCAAGGACATGACACCAACTATACGGAAAACTCAGAA
AATTGTCATTAAGAAGAGAGAACCATTGAATTTTGGTGTCCCAGATGGTAGCACGGGTTTTTCCAGTAGATTGGCAGCTA
CACAAGACATGCCTTTTATTCATCAATCTTCAGAATTAGGTGACTTAGATACATGGCAAGAAAATAGCAATGCGTGGGAA
GAGGAAGAAGATGCAGCCTGGCAAGCAGAAGAGGTGCTGAGGCAGCAGAAAATTGCAGACAGAGAGAAGAGAGCAGCAGA
ACAACAGAGGAAGAAAATGGAGAAGGAAGCGCAGCGCCTGATGAAGAAGGAGCAGAACAAAATCGGTGTGAAGCTTTCCT
AA

Library Parental gene expression (RPM)
SRP007412_brain 16 .54 RPM
SRP007412_cerebellum 16 .54 RPM
SRP007412_heart 16 .16 RPM
SRP007412_kidney 27 .83 RPM
SRP007412_liver 22 .37 RPM
SRP007412_testis 37 .69 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000006190 ortholog_one2one 1 retrogene
retro_amel_1656,
Choloepus hoffmanni ENSCHOG00000007848 ortholog_one2one 5 retrogenes
retro_chof_1116, retro_chof_1455, retro_chof_1805, retro_chof_2245, retro_chof_751,
Cavia porcellus ENSCPOG00000001059 ortholog_one2one 1 retrogene
retro_cpor_1185,
Dipodomys ordii ENSDORG00000010177 ortholog_one2one 2 retrogenes
retro_dord_418, retro_dord_91,
Equus caballus ENSECAG00000009719 ortholog_one2one 2 retrogenes
retro_ecab_211, retro_ecab_232,
Felis catus ENSFCAG00000025490 ortholog_one2one 1 retrogene
retro_fcat_777,
Macropus eugenii ENSMEUG00000014115 ortholog_one2one 3 retrogenes
retro_meug_1871, retro_meug_2058, retro_meug_597,
Monodelphis domestica ENSMODG00000004795 ortholog_one2many 2 retrogenes
retro_mdom_261, retro_mdom_665,
Rattus norvegicus ENSRNOG00000004220 ortholog_one2one 2 retrogenes
retro_rnor_2914, retro_rnor_2980,
Sus scrofa ENSSSCG00000006024 ortholog_one2one 1 retrogene
retro_sscr_569,
Ictidomys tridecemlineatus ENSSTOG00000015326 ortholog_one2one 1 retrogene
retro_itri_1119,
Tursiops truncatus ENSTTRG00000001745 ortholog_one2one 2 retrogenes
retro_ttru_496, retro_ttru_672,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_3501 85.21 66.20
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Download FASTA sequences of all ENSMUSG00000022339 retrocopies