Parental gene:

Ebag9, ENSRNOG00000004220

Aliases:None
Description:Receptor-binding cancer antigen expressed on SiSo cells [Source:UniProtKB/Swiss-Prot;Acc:Q5PQP2]
Organism:Rat (Rattus norvegicus)
Coordinates:7:83579393..83597339(+)


>ENSRNOG00000004220
ATGGCCATCACTCAGTTTCGGTTATTTAAAGTTTGTACCTGCCTAGCAACAGTGTTGTCGTTCCTAAAGAGATTAATATG
CAGATCTGGCAGAGGAAGGAAATTAAGTGGAGACCAAATAACTTTGCCCACCACAGTTGATTATTCGTCTGTCCCTAAGC
AGACAGACGTGGAGGAGTGGACTTCCTGGGATGAAGATGCACCCACAAGTGTGAAGATTGAAGGAGGGACTGGGAATGCA
GCAGCGCAGCAGAACTCTTTGGAACAACTGGAGCCTGACTATTTCAAGGACATGACACCAACTATACGGAAAACGCAGAA
AATTGTCATTAAGAAGAGAGAACCATTGAGTTTTGGTGTCCCAGATGGTAGCACAGGTTTTTCCAGTAGATTGGCAGCTA
CACAAGATATGCCTTTTATTCATCAGTCTTCAGAATTAGGTGACTTAGATACATGGCAAGAAAATAGCAATGCATGGGAA
GAGGAAGAAGATGCAGCCTGGCAAGCAGAAGAAGTTCTGAGGCAGCAGAAAATTGCAGACAGAGAGAAGAGAGCAGCAGA
ACAACAAAGGAAGAAAATGGAGAAGGAAGCACAGCGTCTGCTGAAGAAGGAACAAAACAAAATGGGTGTGAAGCTTTCCT
AA

Library Parental gene expression (RPM)
SRP017611_brain 24 .09 RPM
SRP017611_kidney 30 .43 RPM
SRP017611_liver 18 .62 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000006190 ortholog_one2one 1 retrogene
retro_amel_1656,
Choloepus hoffmanni ENSCHOG00000007848 ortholog_one2one 5 retrogenes
retro_chof_1116, retro_chof_1455, retro_chof_1805, retro_chof_2245, retro_chof_751,
Cavia porcellus ENSCPOG00000001059 ortholog_one2one 1 retrogene
retro_cpor_1185,
Dipodomys ordii ENSDORG00000010177 ortholog_one2one 2 retrogenes
retro_dord_418, retro_dord_91,
Equus caballus ENSECAG00000009719 ortholog_one2one 2 retrogenes
retro_ecab_211, retro_ecab_232,
Felis catus ENSFCAG00000025490 ortholog_one2one 1 retrogene
retro_fcat_777,
Macropus eugenii ENSMEUG00000014115 ortholog_one2one 3 retrogenes
retro_meug_1871, retro_meug_2058, retro_meug_597,
Monodelphis domestica ENSMODG00000004795 ortholog_one2many 2 retrogenes
retro_mdom_261, retro_mdom_665,
Mus musculus ENSMUSG00000022339 ortholog_one2one 1 retrogene
retro_mmus_3501,
Sus scrofa ENSSSCG00000006024 ortholog_one2one 1 retrogene
retro_sscr_569,
Ictidomys tridecemlineatus ENSSTOG00000015326 ortholog_one2one 1 retrogene
retro_itri_1119,
Tursiops truncatus ENSTTRG00000001745 ortholog_one2one 2 retrogenes
retro_ttru_496, retro_ttru_672,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_2914 87.94 92.96
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_rnor_2980 82.81 58.69
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSRNOG00000004220 retrocopies