RetrogeneDB ID: | retro_ecab_541 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 20:29788797..29789136(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NDUFB9 | ||
Ensembl ID: | ENSECAG00000018238 | ||
Aliases: | None | ||
Description: | NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa [Source:HGNC Symbol;Acc:7704] |
Percent Identity: | 60.34 % |
Parental protein coverage: | 63.69 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | YLTHQQKVLRLYKRALRHLESWCIHRDKYRYFACLLRARFEEHKNEKDMVKATQLLREAEEEFWY-NQHP |
YLTHQQKVL.L.K....H..SWCIHRDKY..FA...R..FEEHKNE.D.VKATQ.L.E..EE.....QHP | |
Retrocopy | YLTHQQKVLQLSKSVPCHFKSWCIHRDKYSSFAYVMRTWFEEHKNERDLVKATQPLKEP-EEEFW>DQHP |
Parental | QPYIFPESPGGTSYERYECYKVPEW-CLDDWHPSEKAMYPDYFAKR |
.P..F..SP.GTS.E..EC.K.....CL.DWHPSE..MYPD.FA.R | |
Retrocopy | WPCVFRDSPEGTSSEGDECSKALHG<CLADWHPSERTMYPDFFAER |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 35 .59 RPM |
SRP021940_cerebellum | 0 .00 RPM | 94 .98 RPM |
SRP021940_embryo | 0 .00 RPM | 50 .71 RPM |
SRP021940_placental_villous | 0 .00 RPM | 40 .61 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 29 .92 RPM |
SRP021940_testis | 0 .06 RPM | 204 .36 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000010022 | 1 retrocopy | |
Ailuropoda melanoleuca | ENSAMEG00000015852 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000012818 | 1 retrocopy | |
Equus caballus | ENSECAG00000018238 | 1 retrocopy |
retro_ecab_541 ,
|
Felis catus | ENSFCAG00000004678 | 1 retrocopy | |
Homo sapiens | ENSG00000147684 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000015883 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000017481 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000003765 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000015493 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000001831 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000005484 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000030772 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000018869 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000020569 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000009153 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000021955 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000006895 | 3 retrocopies |