RetrogeneDB ID: | retro_ecab_553 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 20:31585319..31585608(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSECAG00000008404 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 74. % |
Parental protein coverage: | 98.99 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | LWQAEVEET-LKRLQSQKGVQGIIVVNTEGIPIKSTMDNPTTTQYANLMHNFILKARSTVR-EIDPQNDL |
L..AEVE.T..KRLQSQKG.QGII.VNT.GIPIK.TMD.P.TTQ...L.HNFILKA.ST...EIDPQ.DL | |
Retrocopy | LCEAEVEGT<TKRLQSQKGEQGIIMVNT-GIPIKITMDDPSTTQFTSLTHNFILKAWSTIA<EIDPQKDL |
Parental | TFLRIRSKKNEIMVAPDKDYFLIVIQNPTE |
.FL.I.SKKNEI.VAPDKDYFLIV.QN.TE | |
Retrocopy | IFLPIHSKKNEIIVAPDKDYFLIVVQNLTE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .06 RPM | 37 .72 RPM |
SRP021940_cerebellum | 0 .00 RPM | 104 .64 RPM |
SRP021940_embryo | 0 .00 RPM | 75 .03 RPM |
SRP021940_placental_villous | 0 .00 RPM | 60 .62 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 57 .10 RPM |
SRP021940_testis | 0 .00 RPM | 40 .41 RPM |