RetrogeneDB ID: | retro_eeur_672 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_39196:317..834(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LRRC28 | ||
Ensembl ID: | ENSEEUG00000006720 | ||
Aliases: | None | ||
Description: | leucine rich repeat containing 28 [Source:HGNC Symbol;Acc:28355] |
Percent Identity: | 74.29 % |
Parental protein coverage: | 55.31 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | LTLPERLHLCLSLQYLTVDRNLLWCVPRHLCQLPSLNELSMAGNRLAFLPLDLGRSRELQYVYVDNNIHL |
LT.P.RLHL.LSLQ.LTV.RN.L..V.RH.CQLPSLNELSMA.N.LA.LP.DLGR..ELQYV.VDNN.HL | |
Retrocopy | LTVPKRLHLRLSLQRLTVNRNPLCYVQRHFCQLPSLNELSMAENHLACLPCDLGRAQELQYV*VDNNVHL |
Parental | KGLPSYLYNKVI-GCSGCG-APIQVAEVKLLS-FSSGQLTVFLPAEVKAIGTERDHILPLQELAMRSLHH |
K.LPSYL..KVI.G....G.APIQV...KLLS.FSSGQLTVFLPAEVK.IGTERDHILPLQEL.M..LHH | |
Retrocopy | KSLPSYLDSKVI>GAVAMGWAPIQVS*AKLLSFFSSGQLTVFLPAEVKVIGTERDHILPLQELTMWNLHH |
Parental | TCHRLLKDLNFLSPISLPRSLLELLHCPLGHCHRC |
TCHRLLKDLN.LSPISLPRSLL...HC..G....C | |
Retrocopy | TCHRLLKDLNVLSPISLPRSLLG--HCDQGSEPMC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .48 RPM | 13 .86 RPM |
SRP017611_kidney | 0 .56 RPM | 13 .32 RPM |
SRP017611_liver | 0 .00 RPM | 12 .70 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000016965 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000006720 | 1 retrocopy |
retro_eeur_672 ,
|
Monodelphis domestica | ENSMODG00000012729 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000004380 | 1 retrocopy |