Parental gene: | LRRC28, ENSMODG00000012729 |
| Aliases: | None |
| Description: | leucine rich repeat containing 28 [Source:HGNC Symbol;Acc:28355] |
| Organism: | Opossum (Monodelphis domestica) |
| Coordinates: | 1:137471070..137662220(+) |
>ENSMODG00000012729
ATGGCATCAGAACTTTGTAAGACAATCTCTGTGGCGAAGCTGGAAAAGCACAAGAATTTGTTCTTAAATTACAGGAATCT
GCACCATTTTCCAGTGGAGTTACTGAAAGATGAGGGCCTGCAGTACTTGGAAAGACTCTATATGAAAAGAAACTCCCTAA
CAACCTTGCCAGAAGATCTTGCTCAGAAGCTCCCAAACCTAGTGGAATTGTACCTTCATTCAAATAATATAGTTGTTGTA
CCTGAAGCCATTGGTTCCCTTGTAAAGCTCCAATGTCTGGATCTGAGTGACAATGCCTTGGAAATTGTCTGCCCAGAGAT
TGGTCGTCTAAGATCCTTACGTCACCTTCGATTAGCTAATAATCAACTAAAATTCCTACCTCCAGAAGTTGGAGATTTGA
AGGAGCTGCAAACACTGGACCTTTCTACGAATTGTTTGCTAACTTTACCAGAGAGGCTTCATATGTGCCTTTCTCTGCAG
TATCTAACTGTGGATCGAAATCGCTTATGGTGTGTACCTCGCCATCTTTGCCAACTTCCCAGCCTCAATGAACTCTCAAT
GGCTGGAAACCGTCTTGCATTTTTGCCACTTGATTTAGGTCGCTCTCGAGAACTACAATATGTATATGTGGATAACAACA
TTCACCTGAAAGGCTTGCCCTCCTATTTGTATAATAAGGTCATCGGTTGCAGTGGCTGTGGCTCCCCCATTCAAGTTTCA
GAGGTGAAGCTGCTTTCATTCTCATCAGGGCAATTAACTGTTTTCCTCCCATCGGAGGTTAAGTCTATAGGGACAGAAAC
AGATCATGTCCTGCCCTTGCAAGAATTAGCCATGAGAAGCCTGTATAATGCCTACTACAAGTTTATAAAAGATTTGAACT
TCCTGTCTCCAATTTCATTACCCAAAAGTCTCCTGGAGTTGCTACACTGCCCTCTGGGACATTGTCACCGTTGTAGTGAG
CCAATGTTTACTATTGTCTACCCAAAGCTCTTTCCCCTGAGAGAGACACCAATGGCGGGGCTGCACCAGGGGAGGACAAC
TGTGAGTTTTGTAGCTTACTGCTGCTCCACCCAGTGTCTGCGGACTTTTGACCTACTGAGTTGA
ATGGCATCAGAACTTTGTAAGACAATCTCTGTGGCGAAGCTGGAAAAGCACAAGAATTTGTTCTTAAATTACAGGAATCT
GCACCATTTTCCAGTGGAGTTACTGAAAGATGAGGGCCTGCAGTACTTGGAAAGACTCTATATGAAAAGAAACTCCCTAA
CAACCTTGCCAGAAGATCTTGCTCAGAAGCTCCCAAACCTAGTGGAATTGTACCTTCATTCAAATAATATAGTTGTTGTA
CCTGAAGCCATTGGTTCCCTTGTAAAGCTCCAATGTCTGGATCTGAGTGACAATGCCTTGGAAATTGTCTGCCCAGAGAT
TGGTCGTCTAAGATCCTTACGTCACCTTCGATTAGCTAATAATCAACTAAAATTCCTACCTCCAGAAGTTGGAGATTTGA
AGGAGCTGCAAACACTGGACCTTTCTACGAATTGTTTGCTAACTTTACCAGAGAGGCTTCATATGTGCCTTTCTCTGCAG
TATCTAACTGTGGATCGAAATCGCTTATGGTGTGTACCTCGCCATCTTTGCCAACTTCCCAGCCTCAATGAACTCTCAAT
GGCTGGAAACCGTCTTGCATTTTTGCCACTTGATTTAGGTCGCTCTCGAGAACTACAATATGTATATGTGGATAACAACA
TTCACCTGAAAGGCTTGCCCTCCTATTTGTATAATAAGGTCATCGGTTGCAGTGGCTGTGGCTCCCCCATTCAAGTTTCA
GAGGTGAAGCTGCTTTCATTCTCATCAGGGCAATTAACTGTTTTCCTCCCATCGGAGGTTAAGTCTATAGGGACAGAAAC
AGATCATGTCCTGCCCTTGCAAGAATTAGCCATGAGAAGCCTGTATAATGCCTACTACAAGTTTATAAAAGATTTGAACT
TCCTGTCTCCAATTTCATTACCCAAAAGTCTCCTGGAGTTGCTACACTGCCCTCTGGGACATTGTCACCGTTGTAGTGAG
CCAATGTTTACTATTGTCTACCCAAAGCTCTTTCCCCTGAGAGAGACACCAATGGCGGGGCTGCACCAGGGGAGGACAAC
TGTGAGTTTTGTAGCTTACTGCTGCTCCACCCAGTGTCTGCGGACTTTTGACCTACTGAGTTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain | 94 .17 RPM |
| SRP007412_cerebellum | 43 .42 RPM |
| SRP007412_heart | 73 .16 RPM |
| SRP007412_kidney | 109 .30 RPM |
| SRP007412_liver | 123 .35 RPM |
| SRP007412_testis | 474 .78 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000016965 | ortholog_one2many | 1 retrogene | |
| Erinaceus europaeus | ENSEEUG00000006720 | ortholog_one2one | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000009942 | within_species_paralog | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000004380 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_mdom_1822 | 57.37 | 51.50 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSMODG00000012729 retrocopies