Parental gene: | LRRC28, ENSCJAG00000016965 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 6:8279453..8402097(-) |
>ENSCJAG00000016965
ATGGCATCTGAACTTTGTAAGACGATCTCTGTGGCAAGGCTGGAAAAGCACAAGAATTTGTTCTTAAATTACAGGAATCT
GCACCATTTTCCTTTGGAGTTACTAAAAGATGAGGGACTGCAGTACTTGGAGAGACTCTATATGAAAAGGAACTCCCTGA
CAACCTTGCCAGAAAACCTTGCTCAGAAGCTTCCAAACCTTGTGGAACTATACCTGCACTCAAATAACATAGTTGTGGTA
CCAGAAGCCATTGGGTCCCTTGTAAAACTCCAATGTCTGGATCTTAGTGACAATGCCTTAGAAATAGTTTGCCCAGAAAT
TGGTCGTCTGAGAGCTTTACGTCATCTTCGATTAGCTAATAACCAGCTGCAATTCCTACCTCCAGAGGTTGGCGATTTGA
AGGAGCTGCAGACACTAGACATTTCTACCAATCGTTTGCTAACTTTACCCGAGAGGCTTCACATGTGCCTTTCTCTGCAG
TACCTCACCGTGGACCGAAATCGTCTATGGTATGTGCCGCGCCATCTCTGCCAGCTGCCCAGCCTCAATGAGCTCTCCAT
GGCTGGAAACCGTCTTGCATTTTTGCCACTTGATTTAGGTCGATCTCGAGAACTACAATATGTGTACGTGGATAACAACA
TAAACCTGAAAGGCTTGCCATCTTATCTGTACAATAAAGTCATCGGGTGCAGTGGCTGTGGTGCTCCCATTCAAGTTTCT
GAGGTGAAGCTGCTTTCCTTTTCATCAGGGCCTCGAACCGTTTTCCTCCCAGCCGAGGTGAAGGCCATAGGGACAGAGCA
TGATCACATCCTCCCTCTGCAGGAATTGGCCATGAGAAGTCTGTATCATACCTACCACAGGTTTCTGAAAGATTTGAACT
TTCTGTCTCCAATCTCATTACCCAGAAGTCTCCTGGAGCTGCTGCACTGCCCTCTGGGGCACTGTCATCGGTGTAGTGAG
CCTATGTTTACCATCGTCTACCCCAAGCTCTTTCCCTTGAGAGAGACGCCAATGGCAGGGCTGCACCAGGGGAGGACAAC
TGTTAGTTTTGTGGCTTACTGCTGCTCCACCCAGTGTCTGCAGACTTTTGACCTGCTGAGTTGA
ATGGCATCTGAACTTTGTAAGACGATCTCTGTGGCAAGGCTGGAAAAGCACAAGAATTTGTTCTTAAATTACAGGAATCT
GCACCATTTTCCTTTGGAGTTACTAAAAGATGAGGGACTGCAGTACTTGGAGAGACTCTATATGAAAAGGAACTCCCTGA
CAACCTTGCCAGAAAACCTTGCTCAGAAGCTTCCAAACCTTGTGGAACTATACCTGCACTCAAATAACATAGTTGTGGTA
CCAGAAGCCATTGGGTCCCTTGTAAAACTCCAATGTCTGGATCTTAGTGACAATGCCTTAGAAATAGTTTGCCCAGAAAT
TGGTCGTCTGAGAGCTTTACGTCATCTTCGATTAGCTAATAACCAGCTGCAATTCCTACCTCCAGAGGTTGGCGATTTGA
AGGAGCTGCAGACACTAGACATTTCTACCAATCGTTTGCTAACTTTACCCGAGAGGCTTCACATGTGCCTTTCTCTGCAG
TACCTCACCGTGGACCGAAATCGTCTATGGTATGTGCCGCGCCATCTCTGCCAGCTGCCCAGCCTCAATGAGCTCTCCAT
GGCTGGAAACCGTCTTGCATTTTTGCCACTTGATTTAGGTCGATCTCGAGAACTACAATATGTGTACGTGGATAACAACA
TAAACCTGAAAGGCTTGCCATCTTATCTGTACAATAAAGTCATCGGGTGCAGTGGCTGTGGTGCTCCCATTCAAGTTTCT
GAGGTGAAGCTGCTTTCCTTTTCATCAGGGCCTCGAACCGTTTTCCTCCCAGCCGAGGTGAAGGCCATAGGGACAGAGCA
TGATCACATCCTCCCTCTGCAGGAATTGGCCATGAGAAGTCTGTATCATACCTACCACAGGTTTCTGAAAGATTTGAACT
TTCTGTCTCCAATCTCATTACCCAGAAGTCTCCTGGAGCTGCTGCACTGCCCTCTGGGGCACTGTCATCGGTGTAGTGAG
CCTATGTTTACCATCGTCTACCCCAAGCTCTTTCCCTTGAGAGAGACGCCAATGGCAGGGCTGCACCAGGGGAGGACAAC
TGTTAGTTTTGTGGCTTACTGCTGCTCCACCCAGTGTCTGCAGACTTTTGACCTGCTGAGTTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 13 .63 RPM |
| SRP051959_skeletal_muscle | 12 .34 RPM |
| SRP051959_lymph_node | 10 .96 RPM |
| SRP051959_lung | 11 .44 RPM |
| SRP051959_liver | 27 .83 RPM |
| SRP051959_kidney | 31 .04 RPM |
| SRP051959_heart | 15 .58 RPM |
| SRP051959_colon | 10 .94 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000002991 | other_paralog | 1 retrogene | |
| Erinaceus europaeus | ENSEEUG00000006720 | ortholog_one2one | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000012729 | ortholog_one2many | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000004380 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_2430 | 97.28 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000016965 retrocopies