RetrogeneDB ID: | retro_etel_1329 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_247749:6318..6646(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSETEG00000010391 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 61.61 % |
Parental protein coverage: | 56.92 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MPKAKGKTRRQKFGYNVNRKRMNRHARRKAAPRIECSHIRHAWDHAKSVRQNLAEMGLAMDPNKVL-PLR |
MP.AKGKTRRQK.GYN...K..N..A..KAA....CSH..HAWDH.K.V.Q.LAEMGLA.DP.K...P.. | |
Retrocopy | MPTAKGKTRRQKLGYNIH*KWINGNAPLKAAQHMACSHG*HAWDHTKLVQQSLAEMGLATDPHKIV>PPK |
Parental | KRKVHAMEVDGGRRKELVRKPYVLNELEAEASLPEKKDHSLS |
KR.....EVDG....ELVRKPY.LNELEAEASLP.K.D...S | |
Retrocopy | KRCM--VEVDGEWKSELVRKPYALNELEAEASLPAKLDRTSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000016694 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000012315 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000026072 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000010391 | 1 retrocopy |
retro_etel_1329 ,
|
Myotis lucifugus | ENSMLUG00000003504 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000012552 | 1 retrocopy | |
Mus musculus | ENSMUSG00000025869 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000000824 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000017284 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000029577 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000004869 | 1 retrocopy |