RetrogeneDB ID:

retro_etel_1329

Retrocopy
location
Organism:Lesser hedgehog tenrec (Echinops telfairi)
Coordinates:scaffold_247749:6318..6646(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSETEG00000010391
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_etel_1329
ATGCCCACGGCCAAGGGTAAGACCCGGAGGCAGAAGTTGGGTTACAATATCCACTGAAAGTGGATAAATGGGAATGCTCC
TTTGAAGGCTGCGCAGCACATGGCGTGCTCTCACGGCTGACACGCCTGGGACCACACCAAATTGGTGCAGCAGAGCCTGG
CTGAGATGGGGCTGGCCACGGACCCCCACAAGATCGTACCCTCCTAAAAAGAGGTGCATGGTGGAGGTGGATGGCGAGTG
GAAGAGCGAGCTCGTGCGGAAGCCCTATGCGTTGAATGAGCTGGAGGCGGAAGCCAGCCTCCCCGCAAAGCTAGATAGGA
CCTCATCG

ORF - retro_etel_1329 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 61.61 %
Parental protein coverage: 56.92 %
Number of stop codons detected: 2
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMPKAKGKTRRQKFGYNVNRKRMNRHARRKAAPRIECSHIRHAWDHAKSVRQNLAEMGLAMDPNKVL-PLR
MP.AKGKTRRQK.GYN...K..N..A..KAA....CSH..HAWDH.K.V.Q.LAEMGLA.DP.K...P..
RetrocopyMPTAKGKTRRQKLGYNIH*KWINGNAPLKAAQHMACSHG*HAWDHTKLVQQSLAEMGLATDPHKIV>PPK
ParentalKRKVHAMEVDGGRRKELVRKPYVLNELEAEASLPEKKDHSLS
KR.....EVDG....ELVRKPY.LNELEAEASLP.K.D...S
RetrocopyKRCM--VEVDGEWKSELVRKPYALNELEAEASLPAKLDRTSS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Echinops telfairi was not studied using RNA-Seq expression data.
Echinops telfairi was not studied using ChIP-Seq data.
Echinops telfairi was not studied using EST data.
Echinops telfairi was not studied using FANTOM5 data.
retro_etel_1329 was not experimentally validated.

Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 11 parental genes, and 14 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG000000166942 retrocopies
Callithrix jacchus ENSCJAG000000123151 retrocopy
Cavia porcellus ENSCPOG000000260721 retrocopy
Echinops telfairi ENSETEG00000010391 1 retrocopy
retro_etel_1329 ,
Myotis lucifugus ENSMLUG000000035041 retrocopy
Mustela putorius furoENSMPUG000000125521 retrocopy
Mus musculus ENSMUSG000000258692 retrocopies
Otolemur garnettii ENSOGAG000000008242 retrocopies
Rattus norvegicus ENSRNOG000000172841 retrocopy
Sus scrofa ENSSSCG000000295771 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000048691 retrocopy



Copyright © RetrogeneDB 2014-2017