RetrogeneDB ID: retro_mputfur_381

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896906.1:7499467..7500002(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMPUG00000004637
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMPUG00000012552
• Aliases: None
• Description: NOP16 nucleolar protein-like protein [Source:UniProtKB/TrEMBL;Acc:G9KDN0]

Sequence

>retro_mputfur_381
ATGCCCAAAGCCAAGGGGAAGACCAGGAGACAGAAGTTCAGTTACAATGTTAACCAGAAGCGGCTGAACCAGAATGTTCG
ATGGAAAGCGGCGTCATGGGTCAAGTGCTCCCACATCCAACATGCCTGGAACCACGCCAAATCCATGCAACAGAACCTGA
TCGAGATGGGGTTGGCTATGGACCCCAACAAGGCGGTTCCTCTCTGTAAGAGAAAGGTGAAGGCCATGGATGTGGATGTA
GAGGAGAGGTCTATGGAGCTTGTGCGGAAGCCCTATGTACTAAACGACCTGGAGGCAGAACCCAGCCTTTCAGAAAAGAA
AGGAAACACACTTTCTCGAGAACTCATTGACTATGTGTGCTACATGGTGGAGAAGCATGGAGACAACTACAAGGCTATGG
CCCAGGATGAGAAGAATTACTATCCACATACCCTGCAAACAGATTCGGAATAAGATCAACGTCTATAAGCATTTTTACCC
AACGGAGTGGCAAACCTTCATTGATTCTTTGCAGAAGAGTAAGAGGGAGGTTGAG

Alignment

ORF - retro_mputfur_381 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 80.45 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MPKAKGKTRRQKFGYNVNRKRLNRNARRKAAPRIECSHIRHAWDHAKSVRQNLAEMGLAMDPNKAVPLRK
          MPKAKGKTRRQKF.YNVN.KRLN.N.R.KAA....CSHI.HAW.HAKS..QNL.EMGLAMDPNKAVPL.K
Retrocopy MPKAKGKTRRQKFSYNVNQKRLNQNVRWKAASWVKCSHIQHAWNHAKSMQQNLIEMGLAMDPNKAVPLCK

Parental  RKVKAMEVDIEERPKELVRKPYVLNDLEAEASLPEKKGNTLSRDLIDYVRYMVENHGEDYKAMARDEKNY
          RKVKAM.VD.EER..ELVRKPYVLNDLEAE.SL.EKKGNTLSR.LIDYV.YMVE.HG..YKAMA.DEKNY
Retrocopy RKVKAMDVDVEERSMELVRKPYVLNDLEAEPSLSEKKGNTLSRELIDYVCYMVEKHGDNYKAMAQDEKNY

Parental  YQDT-PKQIRNKINVYKRFYPAEWQTFIDSLQKNKMEVE
          Y..T..KQIRNKINVYK.FYP.EWQTFIDSLQK.K.EVE
Retrocopy YPHT>CKQIRNKINVYKHFYPTEWQTFIDSLQKSKREVE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_381 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_381 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 11 parental genes, and 14 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000016694	2 retrocopies	retro_cfam_1790, retro_cfam_1793,
Callithrix jacchus	ENSCJAG00000012315	1 retrocopy	retro_cjac_2208,
Cavia porcellus	ENSCPOG00000026072	1 retrocopy	retro_cpor_129,
Echinops telfairi	ENSETEG00000010391	1 retrocopy	retro_etel_1329,
Myotis lucifugus	ENSMLUG00000003504	1 retrocopy	retro_mluc_2425,
Mustela putorius furo	ENSMPUG00000012552	1 retrocopy	retro_mputfur_381 ,
Mus musculus	ENSMUSG00000025869	2 retrocopies	retro_mmus_3033, retro_mmus_3258,
Otolemur garnettii	ENSOGAG00000000824	2 retrocopies	retro_ogar_1323, retro_ogar_2299,
Rattus norvegicus	ENSRNOG00000017284	1 retrocopy	retro_rnor_2739,
Sus scrofa	ENSSSCG00000029577	1 retrocopy	retro_sscr_510,
Ictidomys tridecemlineatus	ENSSTOG00000004869	1 retrocopy	retro_itri_1124,