RetrogeneDB ID: retro_fcat_1191

Retrocopy location

• Organism: Cat (Felis catus)
• Coordinates: C1:68990298..68990634(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: N-RAS
• Ensembl ID: ENSFCAG00000019026
• Aliases: None
• Description: Ras p21 [Source:UniProtKB/TrEMBL;Acc:O62638]

Sequence

>retro_fcat_1191
ATGACTGAGTACAAACTGGTGGCAGTTGGAGCAGCTGGTGTTGGGAAAAGCACACTGACAACCCAGCTAATCCAGAACCA
CTTTGTAGATGAATGTGATTCCAACATAGAGGATTTTAACTGAAAACAGGTGGTTACAGATGGTAAAACCTGTGTTCTGG
ACATAATGGATACAGCTAGTCAAGAAGAATACAGTGCCATGAGAGACCAATACATGAGGACAGGTGAAGGCTTCCTCTGT
GTATGTGCCATCAATAATAGCAAATCATTTGCAGATATTAACCTCTACAGGGAACAGCTTAAGCAAGTAAAAAACTCAGA
TGAAACAAGTGTGATT

Alignment

ORF - retro_fcat_1191 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 78.57 %
• Parental protein coverage: 59.26 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQ
          MTEYKLV.VGA.GVGKS.LT.QLIQNHFVDE.D..IED...KQVV.DG.TC.LDI.DTA.QEEYSAMRDQ
Retrocopy MTEYKLVAVGAAGVGKSTLTTQLIQNHFVDECDSNIEDFN*KQVVTDGKTCVLDIMDTASQEEYSAMRDQ

Parental  YMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMV
          YMRTGEGFLCV.AINNSKSFADINLYREQ.K.VK.SD.....
Retrocopy YMRTGEGFLCVCAINNSKSFADINLYREQLKQVKNSDETSVI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP017611_brain	0.00 RPM	10.56 RPM
SRP017611_kidney	0.00 RPM	8.55 RPM
SRP017611_liver	0.00 RPM	7.89 RPM

ChIP-Seq

Felis catus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_fcat_1191 retrocopy.

TSS

Felis catus was not studied using FANTOM5 data.

Lab

retro_fcat_1191 was not experimentally validated.

Homology

Retrocopy orthology:

Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 10 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000017134	1 retrocopy	retro_amel_885,
Callithrix jacchus	ENSCJAG00000036517	1 retrocopy	retro_cjac_2400,
Felis catus	ENSFCAG00000019026	1 retrocopy	retro_fcat_1191 ,
Loxodonta africana	ENSLAFG00000020706	1 retrocopy	retro_lafr_492,
Macropus eugenii	ENSMEUG00000002675	1 retrocopy	retro_meug_2136,
Myotis lucifugus	ENSMLUG00000022354	1 retrocopy	retro_mluc_741,
Monodelphis domestica	ENSMODG00000004590	1 retrocopy	retro_mdom_51,
Oryctolagus cuniculus	ENSOCUG00000022455	1 retrocopy	retro_ocun_850,
Rattus norvegicus	ENSRNOG00000023079	2 retrocopies	retro_rnor_2867, retro_rnor_619,
Sus scrofa	ENSSSCG00000006753	1 retrocopy	retro_sscr_520,