RetrogeneDB ID: retro_mluc_741

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429773:19605255..19605653(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000026148
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: NRAS
• Ensembl ID: ENSMLUG00000022354
• Aliases: None
• Description: None

Sequence

>retro_mluc_741
GTGGACATAGCTGGACAAGAGTACAGTGTCATGAGAGACCAGGTCATGAGAGCAGGAGAAGGCTTCCTCTGTGTATTTTC
CATCAATAACAGCAAGTCATCTGCAGATAGTGACCTCCGCAGGGAACAGAATAAGCAAGCAAAGGATGCAGGTGACGCAC
CTATGGTGCTGACAGGAAACAAGTGTGATTTGCCAACAAGGACAGTGGACACAAAACAAGCCCATGTGCTGCCCAAGAGT
GATGGGATTCCATTCACTGGAACCTCAGCCAGGACCAGGCACGGTGCTGAAGATGCCTTTTGGACTCTGGGAAGAGAAAT
ATGTCAGTGCCGAATGAAAAAACTCCATGGCAGTGATGATGGGTGCGGGGTTGCATGGTGTTGCCTTGTGTGGTGATG

Alignment

ORF - retro_mluc_741 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 73.33 %
• Parental protein coverage: 70.9 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTV
          .D.AGQE.YS.MRDQ.MR.GEGFLCVF.INNSKS.AD..L.REQ.K..KD..D.PMVL.GNKCDLPTRTV
Retrocopy VDIAGQE-YSVMRDQVMRAGEGFLCVFSINNSKSSADSDLRREQNKQAKDAGDAPMVLTGNKCDLPTRTV

Parental  DTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKKLNSSDDG-TQGCMGLPCVVM
          DTKQAH.L.KS.GIPF..TSA.TR.G.EDAF.TL.REI.Q.RMKKL..SDDG...GCM.LPCVVM
Retrocopy DTKQAHVLPKSDGIPFTGTSARTRHGAEDAFWTLGREICQCRMKKLHGSDDG<VRGCMVLPCVVM

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_741 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 12 parental genes, and 16 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000017134	1 retrocopy	retro_amel_885,
Callithrix jacchus	ENSCJAG00000036517	1 retrocopy	retro_cjac_2400,
Felis catus	ENSFCAG00000019026	1 retrocopy	retro_fcat_1191,
Loxodonta africana	ENSLAFG00000020706	1 retrocopy	retro_lafr_492,
Macropus eugenii	ENSMEUG00000002675	1 retrocopy	retro_meug_2136,
Myotis lucifugus	ENSMLUG00000010571	3 retrocopies	retro_mluc_2311, retro_mluc_2312, retro_mluc_2313,
Myotis lucifugus	ENSMLUG00000016606	2 retrocopies	retro_mluc_1126, retro_mluc_2211,
Myotis lucifugus	ENSMLUG00000022354	1 retrocopy	retro_mluc_741 ,
Monodelphis domestica	ENSMODG00000004590	1 retrocopy	retro_mdom_51,
Oryctolagus cuniculus	ENSOCUG00000022455	1 retrocopy	retro_ocun_850,
Rattus norvegicus	ENSRNOG00000023079	2 retrocopies	retro_rnor_2867, retro_rnor_619,
Sus scrofa	ENSSSCG00000006753	1 retrocopy	retro_sscr_520,